View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_low_9 (Length: 423)
Name: NF7791_low_9
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 41037243 - 41036836
Alignment:
| Q |
16 |
taaactactttaactaacaactgtttttcctggaatgggatcatgattcatcaataagtctggtggtaaattcattcaaccttaaaatatgtatgcagtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41037243 |
taaactactttaactaacaactgtttttcctggaatgggatcatgattcatcaataagtccggtggtaaattcattcaaccttaaaatatgtatgcagtg |
41037144 |
T |
|
| Q |
116 |
tatgtttactttcatttttggaggagacaaaattgttactgaaggtgtaaacttgattttcatatatttgaatgttctcaagtaaaattaatttttacta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037143 |
tatgtttactttcatttttggaggagacaaaattgttactgaaggtgtaaacttgattttcatatatttgaatgttctcaagtaaaattaatttttacta |
41037044 |
T |
|
| Q |
216 |
gaagctagaa---------tttacctctgcaattagtttttaccctttaatctattgttcaaccataaatgtatctaaacatattttttgtcacggaagt |
306 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037043 |
gaagctagaattcagaccttttacctctgcaattagtttttaccctttaatctattgttcaaccataaatgtatctaaacatattttttgtcacggaaga |
41036944 |
T |
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| Q |
307 |
acaaaatacacacaaaatcatgataaaacttgtcaaggaacatgaacatgtgatatatcatattcttagcaactgctgagagaaataagtgtcgcatacc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41036943 |
acaaaatacacacaaaatcatgataaaacttgtcaaggaacatgaacatgtgatatatcatattcttagcaactgctgagagaaataagtgtcgcatacc |
41036844 |
T |
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| Q |
407 |
agtattat |
414 |
Q |
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|||||||| |
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| T |
41036843 |
agtattat |
41036836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 41031734 - 41031689
Alignment:
| Q |
17 |
aaactactttaactaacaactgtttttcctggaatgggatcatgat |
62 |
Q |
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| T |
41031734 |
aaactactttaactaacaactgtttttcctggaatgcgatcatgat |
41031689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 41031423 - 41031362
Alignment:
| Q |
307 |
acaaaatacacacaaaatcatgataaaacttgtcaaggaacatgaacatgtgatatatcata |
368 |
Q |
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|||||| | ||||||||||| |||||||||||||| |||| |||||||||||| |||||| |
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| T |
41031423 |
acaaaacagacacaaaatcaggataaaacttgtcatagaactagaacatgtgatacatcata |
41031362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 41031651 - 41031614
Alignment:
| Q |
57 |
catgattcatcaataagtctggtggtaaattcattcaa |
94 |
Q |
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| T |
41031651 |
catgattcatcaacaagtctggtgataaattcattcaa |
41031614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 2410125 - 2410026
Alignment:
| Q |
112 |
agtgtatgtttactttcatttttggaggagacaaaattgttactgaaggtgt-aaacttgattttcatatatttgaatgttctcaagtaaaattaatttt |
210 |
Q |
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||||||||||| ||||| |||||| |||| |||||||||| || ||||||| ||| || ||||| | || |||| ||||||||||||| |||| ||||| |
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| T |
2410125 |
agtgtatgtttgatttcacttttggtggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt |
2410026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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