View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_high_10 (Length: 384)
Name: NF7792_high_10
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 3225155 - 3225521
Alignment:
| Q |
1 |
ttagctttaatatcttgaatatgaagtccatgaataataacattattaacaaattgcattgtaattccagcaccatccctaatttgaacattagctccac |
100 |
Q |
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| T |
3225155 |
ttagctttaatattttgaatatgaagtccatgaatgataacattattaacaaattgcattgtaattccagcaccatccctaatttgaacattagctccac |
3225254 |
T |
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| Q |
101 |
gaccatcaattgttttgtcagaagaaaccatcaattcttggttcaatctaatgaccatgctacgtgcaaaagtgatccataatggtcccttttggacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3225255 |
gaccatcaattgttttgtcagaagaaaccatcaattcttggttcaatctaatgaccatgctacgtgcaaaagtgatccataatggtcccttttggacagc |
3225354 |
T |
|
| Q |
201 |
accaaatctaagggttccaggtttagggtttaccatgtcattatcagactcatcagtgaccacatagattggacctccaagcccaccagttgcctttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3225355 |
accaaatctaagggttccaggtttagggtttaccatgtcattatcagactcatcagtgaccacatagattggacctccaagcccaccagttgtctttctt |
3225454 |
T |
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| Q |
301 |
ccaaagcccttactacacttggctaattgaaatcgattcgcagcccaatcggctttgcacctccaac |
367 |
Q |
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| T |
3225455 |
ccaaagcccttactacacttggctaattgaaatcgattcgcagcccaatcggctttgcacctccaac |
3225521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 2045283 - 2045079
Alignment:
| Q |
31 |
tgaataataacattattaacaaattgcattgtaattccagcaccatccctaatttgaacattagctccacgaccatcaattgttttgtcagaagaaacca |
130 |
Q |
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||||| || ||||| || || |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || || || ||||| || ||||||| |
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| T |
2045283 |
tgaatgatgacattgttgacgaattgcatggtaattccagcaccttccctaatttgcacattggctccacgaccgtcgatggtcttgtcggatgaaacca |
2045184 |
T |
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| Q |
131 |
tcaattcttggttcaatctaatgaccatgctacgtgcaaaagtgatccataatggtcccttttggacaacaccaaatctaagggttccaggtttagggtt |
230 |
Q |
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| || ||||| ||||| ||||||||||| ||||| ||| | ||||| | |||||||||||| || ||||||||| || ||||||||| | ||||| |
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| T |
2045183 |
ttaactcttgagtcaatgtaatgaccatgttacgttggaaaataatccaaagtggtcccttttgaacggcaccaaatcggagagttccaggtcttgggtt |
2045084 |
T |
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| Q |
231 |
tacca |
235 |
Q |
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|||| |
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| T |
2045083 |
cacca |
2045079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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