View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7792_high_13 (Length: 352)
Name: NF7792_high_13
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 45 - 336
Target Start/End: Original strand, 38151251 - 38151542
Alignment:
| Q |
45 |
ttataaatgaaacaggccaacataaatatccttgctatagcacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaagg |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38151251 |
ttataaatgaaacaggccaacataaatatccttgctatagcacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaagg |
38151350 |
T |
|
| Q |
145 |
ctctgcgggctgtccattccagattttataactcacaaaccacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38151351 |
ctctgcgggctgtccattccagattttataactcacaaaccacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagct |
38151450 |
T |
|
| Q |
245 |
aagggatcaggtacaatttctgtttataagtctctgtgtatgccttccgtgcttctttcagtgatttcaagtattataaattggttacagtt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38151451 |
aagggatcaggtacaatttctgtttataagtctctgtgtatgccttccgtgcttctttcagtgatttcaagtattataaattggttacagtt |
38151542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38151185 - 38151229
Alignment:
| Q |
1 |
tgttttgatatgttgttgttttcatttgtttatttattcatttgt |
45 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38151185 |
tgttttgatatgttggtgttttcatttgtttatttattcatttgt |
38151229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 256
Target Start/End: Complemental strand, 35095314 - 35095112
Alignment:
| Q |
54 |
aaacaggccaacataaatatccttgctatagcacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaaggctctgcggg |
153 |
Q |
| |
|
||||||||||| |||||| ||| ||| |||||||||||||| |||||||| ||| ||||||||||| |||||||||||||| |||||| ||| | |||| |
|
|
| T |
35095314 |
aaacaggccaatataaatgtccgtgccatagcacaaggttgttctgagtataatattactgttgttattaagcgagaggatagtataaaagctttacggg |
35095215 |
T |
|
| Q |
154 |
ctgtccattccagattttataactcacaaaccacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagctaagggatca |
253 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| || |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
35095214 |
ctgtccattccagattttatctctcaagaaccaccatagcaatgggaattattggaccaggattaattgggagcacgctacttgatcaactaagggatca |
35095115 |
T |
|
| Q |
254 |
ggt |
256 |
Q |
| |
|
||| |
|
|
| T |
35095114 |
ggt |
35095112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University