View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_high_20 (Length: 289)
Name: NF7792_high_20
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 5767269 - 5767001
Alignment:
| Q |
1 |
gcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767269 |
gcaacacaatgatcattcaaaaaatcagtatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatc |
5767170 |
T |
|
| Q |
101 |
cggggcaatagctgagtacaagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5767169 |
cggggcaatagctgagtacaagcctcctcaaaggaagactttccattgcaatggaggagagaaattgatctgagatacgaaatcccgtcaaaagaagaga |
5767070 |
T |
|
| Q |
201 |
agtcaaatcccttcaaactcaacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaac |
270 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767069 |
agtc-aatcccttcaaactcaacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaac |
5767001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 14003539 - 14003803
Alignment:
| Q |
5 |
cacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggg |
104 |
Q |
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| T |
14003539 |
cacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggg |
14003638 |
T |
|
| Q |
105 |
gcaatagctgagtacaagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagagaagtc |
204 |
Q |
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| T |
14003639 |
gcaatagctgagtacaagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatatgaaatcccgtcaaaagaagagaagtc |
14003738 |
T |
|
| Q |
205 |
aaatcccttcaaactcaacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaac |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14003739 |
-aatcccttcaaactcaacaaggagtcgatgaaatgtgaggtaagatattccaaaccagtagtaac |
14003803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 17627655 - 17627610
Alignment:
| Q |
10 |
tgatcattcaaaaaatcagcatattgaagatccaaatgttggatac |
55 |
Q |
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| T |
17627655 |
tgattattcaaaaaataagcatactgaagatccaaatgttggatac |
17627610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 641449 - 641580
Alignment:
| Q |
30 |
atattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctc |
129 |
Q |
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|||||||||||||| |||||| | || ||| ||| ||||||||| | |||||||| ||||||||| |||| ||||| || ||| ||||| ||| || |
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| T |
641449 |
atattgaagatccagatgttgtaaacatttactcttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtc |
641548 |
T |
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| Q |
130 |
aaaggaagactttccattgcaatggaggagag |
161 |
Q |
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| T |
641549 |
aaaggaaggcctttcattgcaatagaggagag |
641580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 1601013 - 1601073
Alignment:
| Q |
119 |
caagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacg |
179 |
Q |
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| T |
1601013 |
caagcctcctcaaaggaggattttcctttgcaatagaggagagcaactgatccgagatacg |
1601073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 3438226 - 3438101
Alignment:
| Q |
33 |
ttgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaa |
132 |
Q |
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|||||||||||||||||| |||| || |||| ||||||| | | ||||| ||| |||| |||| |||| ||||| | ||| |||||||| |||||| |
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| T |
3438226 |
ttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaa |
3438127 |
T |
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| Q |
133 |
ggaagactttccattgcaatggagga |
158 |
Q |
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| T |
3438126 |
ggaagacctccaattgcaatagagga |
3438101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 38267081 - 38266985
Alignment:
| Q |
80 |
agattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagat |
176 |
Q |
| |
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|||||||||| |||| || |||| |||||| | ||| |||| ||| ||||||||||||||| ||||||||| ||||| ||||| ||||| ||||| |
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| T |
38267081 |
agattccagagaaagtgtagccggtgcaatatccgaggccaaggctcgtcaaaggaagactttgcattgcaatagaggaaaggaagtgatcggagat |
38266985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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