View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_high_24 (Length: 253)
Name: NF7792_high_24
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 27180758 - 27180522
Alignment:
| Q |
14 |
atattattctcgtcgagcatgtgcaagacgcacataataaactcgcggaaaaaagagaagaaataatacaatacgatgccgca------cggaacaccaa |
107 |
Q |
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| T |
27180758 |
atattattctcgtcgagcacgtgcaagacgcacataataaactcgcggaaaaaagagaagaaataatacaatacgatgccgcatatatacggaacaccaa |
27180659 |
T |
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| Q |
108 |
aacaccaataccaac-------------aaggcatcaaacagtgatgctgcaatatacttgcaaagaggcaggcataccactgcctcactctgaacagcc |
194 |
Q |
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| T |
27180658 |
aacaccaataccaacccaaaataccaacaaggcatcaaacagtgatgctgcaatatacttgcaaagaggcaggcataccactgcctcactctgaacaggc |
27180559 |
T |
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| Q |
195 |
caaaatcacaacaccagacggccagagagcatagcat |
231 |
Q |
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| T |
27180558 |
caaaatcacaacaccagacggccagagagcatagcat |
27180522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 27844256 - 27844204
Alignment:
| Q |
14 |
atattattctcgtcgagcatgtgcaagacgcacataataaactcgcggaaaaaa |
67 |
Q |
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| T |
27844256 |
atattattcacgtcgagaatgtgcaagacgcaca-aaaagactcgcggaaaaaa |
27844204 |
T |
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