View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7792_high_29 (Length: 203)

Name: NF7792_high_29
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7792_high_29
NF7792_high_29
[»] chr6 (9 HSPs)
chr6 (20-187)||(370822-370989)
chr6 (20-185)||(1459578-1459743)
chr6 (20-185)||(1470960-1471125)
chr6 (118-175)||(1442234-1442291)
chr6 (116-185)||(7564884-7564953)
chr6 (51-132)||(1453908-1453989)
chr6 (51-132)||(1465600-1465681)
chr6 (117-177)||(9819957-9820017)
chr6 (117-177)||(9825637-9825697)
[»] chr7 (1 HSPs)
chr7 (108-186)||(3926907-3926985)
[»] chr4 (1 HSPs)
chr4 (105-182)||(55419634-55419711)
[»] chr1 (2 HSPs)
chr1 (117-178)||(25478730-25478791)
chr1 (117-178)||(25869303-25869364)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 370822 - 370989
Alignment:
Q  20 cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagacca 119  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370822 cataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagacca 370921  T
Q  120 taatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaatt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  370922 taatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgacccatgaatt 370989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 1459578 - 1459743
Alignment:
Q  20 cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagacca 119  Q
    ||||||||||||  ||  ||||| ||| || |||||||||| |||| || |||||||| ||||| |||||   || | | ||||||||||||||| ||||    
T  1459578 cataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttcatctaaacca 1459677  T
Q  120 taatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaa 185  Q
    |||| ||||||| |||||||||||||| |||| ||| |||||||||||||||||||| ||| ||||    
T  1459678 taattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaa 1459743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 1470960 - 1471125
Alignment:
Q  20 cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagacca 119  Q
    ||||||||||||  ||  ||||| ||| || ||||||||||||||| || |||||||||||||| |||||   || | | ||||||||||||||| | ||    
T  1470960 cataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaacccccaagctaaagttacgcagaggttcatctaaatca 1471059  T
Q  120 taatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaa 185  Q
    |||||||||||  |||||||||||||| |||| ||| |||||| ||||||||||||| ||| ||||    
T  1471060 taatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaagaatgacccgtgaa 1471125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 1442234 - 1442291
Alignment:
Q  118 cataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaat 175  Q
    |||||||||||  | |||||||||||||| |||||||||||||||||||||| |||||    
T  1442234 cataatcaggcaacaaaatctcttgataagactctttttctaaatcaagagagagaat 1442291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 7564884 - 7564953
Alignment:
Q  116 accataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaa 185  Q
    ||||||||| |||||| |||||||||||||| |||| ||  |||||||||| ||||||||| ||||||||    
T  7564884 accataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaa 7564953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 1453908 - 1453989
Alignment:
Q  51 tgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcg 132  Q
    ||||||||||||||| ||||||||||||| ||  |||||   || ||| ||||||| |||||||||||| |||| |||||||    
T  1453908 tgagcaaggatgcataagcaatccctagatactcccaagctcaagtcatgcagaggatcatctagaccaaaatcgggctgcg 1453989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 1465600 - 1465681
Alignment:
Q  51 tgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcg 132  Q
    ||||||||||||||| ||||||||||||| ||  |||||   || ||| ||||||| |||||||||||| |||| |||||||    
T  1465600 tgagcaaggatgcataagcaatccctagatactcccaagctcaagtcatgcagaggatcatctagaccaaaatcgggctgcg 1465681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 9819957 - 9820017
Alignment:
Q  117 ccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgg 177  Q
    ||||||||||||||| |||||||||||||  ||||| |  | ||||||||||||| |||||    
T  9819957 ccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatgg 9820017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 9825637 - 9825697
Alignment:
Q  117 ccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgg 177  Q
    ||||||||||||||| |||||||||||||  ||||| |  | ||||||||||||| |||||    
T  9825637 ccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatgg 9825697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 3926985 - 3926907
Alignment:
Q  108 tcatctagaccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaat 186  Q
    ||||| |||||| |||| ||| | ||||||||||||||  |||| ||| |||||||||||||||||||| |||||||||    
T  3926985 tcatcaagaccaaaatcgggccgtgaaatctcttgataggactcgtttcctaaatcaagagaaagaatgacccatgaat 3926907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 55419711 - 55419634
Alignment:
Q  105 ggttcatctagaccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccat 182  Q
    ||||||||||||||||| || || |||| |||| |||||||| |||| ||| ||||||| |||||||||||| |||||    
T  55419711 ggttcatctagaccatactcgggatgcggaatcacttgataagactcatttcctaaatccagagaaagaatgacccat 55419634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 25478791 - 25478730
Alignment:
Q  117 ccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggc 178  Q
    |||||||||||||| ||||||||||||||| |||||||  | |||| |||||||| ||||||    
T  25478791 ccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatggc 25478730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 25869303 - 25869364
Alignment:
Q  117 ccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggc 178  Q
    |||||||||||||| ||||| ||||||||  |||||||| | |||| |||||||| ||||||    
T  25869303 ccataatcaggctgtgaaatgtcttgataggactcttttcccaaatgaagagaaacaatggc 25869364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University