View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_high_5 (Length: 484)
Name: NF7792_high_5
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 9106808 - 9107257
Alignment:
| Q |
17 |
tggtgttcgttgagatataatcgttaagacagaatacaaagaaatgaggtggccgtaaaaatatgatagtttgagatggtacaattatctgttcgaacaa |
116 |
Q |
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| T |
9106808 |
tggtgttcgttgagatatagtcgttaagacagaatacaaagaaatgaggtggccgtaaaaatatgatagtttgagatggtacaattatctgttcgaacaa |
9106907 |
T |
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| Q |
117 |
accagttgtattatacattacaatgaaaatggtcgttgtgcacatgtacttgaagtgaaattggaggataaactcatgtcagcccttgtagggaatgaat |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9106908 |
accagttgtattatacattacaatgagaatggtcgttgtacacatgtacttgaagtgaaattggaggataaactcatgtcagcccttgtagggaatgaat |
9107007 |
T |
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| Q |
217 |
gctagatgattacgatattccggtaagcatgtcttcttgatgactttaatgcaagaggacctgacaatagcgatcttctagacatcgggttctctaaagt |
316 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9107008 |
gctagatgattatgatattctggtaagcatgtcttcttgatgactttaatgcaagaggacctgacaatagcgatcttctagacatcgggttctctaaagt |
9107107 |
T |
|
| Q |
317 |
cagtgaaggttcagtttgttctttcttccaaaggtttctgaaatttcggcctttaaattcttctgacaagaggcagtcatcagaggttttggatttattc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9107108 |
cagtgaaggttcagtttgttctttcttccaaaggtttctgaaatttcggcctttaaattcttctgacaagaggcagtcataagaggttttggatttattc |
9107207 |
T |
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| Q |
417 |
ttcatgcttcgtcaaactcaacttcttcctttgagatagagtgttaacct |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9107208 |
ttcatgcttcgtcaaactcaacttcttcctttgagatagagtgttaacct |
9107257 |
T |
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