View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7792_high_6 (Length: 453)
Name: NF7792_high_6
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 31041040 - 31040628
Alignment:
| Q |
16 |
atcttgggcatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctcactttgtc |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31041040 |
atcttgggtatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctcactttgtc |
31040941 |
T |
|
| Q |
116 |
aattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgtattgaacaagacttgtctagtctgtctccttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040940 |
aattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgtattgaacaagacttgtctagtctgtctccttg |
31040841 |
T |
|
| Q |
216 |
ctttcagcatcagctgattttcgaggtctctactgtcctgagctggaattttaacctctttcaattatttgattaagtctttgcatcagataccttacac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040840 |
ctttcagcatcagctgattttcgaggtctctcctgtcctgagctggaattttaacctctttcaattatttgattaagtctttgcatcagataccttacac |
31040741 |
T |
|
| Q |
316 |
acctctcttacttctccactattttcattacaccttctttcttgctgcaatgtattcattatttctatgaatactcttatttagtgcttccactgttccc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040740 |
acctctcttacttctccactattttcattacaccttctttcttgctgcaatgtattcattatttctatgaatactcttatttagtgcttccactgttccc |
31040641 |
T |
|
| Q |
416 |
attactctgtttt |
428 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31040640 |
attactctgtttt |
31040628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University