View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7792_low_1 (Length: 766)
Name: NF7792_low_1
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 614; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 9 - 748
Target Start/End: Complemental strand, 1268934 - 1268199
Alignment:
| Q |
9 |
tgtatatgttttatattaataatgtatgcttgaggtggatattagggtttataactaagcatacaaagatgggaatgtgaggcttatatatatagtctaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1268934 |
tgtatatgttttatattaataatgtatgcttgaggtggatattagggtttataactaagcatacaaagatgggaatgtgaggcttatatatatagtctaa |
1268835 |
T |
|
| Q |
109 |
aagatgtggatttgaacttgggtcagtctcaagtttggttgagaactaaactcaacttcattttctttctaacgaggaaaagaattacaatgaaagaaat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| | |
|
|
| T |
1268834 |
aagatgtggatttgaacttgggtcagtctcaagtttggttgagaactaaactcaacttcattttctttccaatgaggaaaagaattacaatgaa-gaatt |
1268736 |
T |
|
| Q |
209 |
tgttagtcatgaacgcttaaaaagcataaaataaaagtgtgatttaccacgttaacacttcaataagtatgattccaatttttcactcacaaatgtaatt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1268735 |
tgttagtcatgaacgcttaaaaagcataaaataaaagtgtgatttaccacgataacacttcaataagtatgattccaatttttcactcacaaatgtaatt |
1268636 |
T |
|
| Q |
309 |
ttaccaatacgcaaacaagactttaattgtggaaacatacatctacatcattttagatgtacacatccacaaaaatgtgacttttgtatcatctgaatgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1268635 |
ttaccaatacgcaaacaagactttaattgtggaaacatacatctacatcattttagatgtacacatccacaaaaatgtgacttttgtaccatctgaatgt |
1268536 |
T |
|
| Q |
409 |
acatttttaaataaaatatatagatcatctaataattcatcactattaaataaatatgtagtttgaaattgcattcccatccgttaacatggtcatacat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||| ||| |||| |||||| |||||||| |
|
|
| T |
1268535 |
acatttttaaataaaatatatagatcatctaataat---tcactactaaagaaatgtgtagtttgaaattgcatttccaaccgtcaacatgatcatacat |
1268439 |
T |
|
| Q |
509 |
tcacatattgactgtctgatcttaataagagatcgtttaaagaaaatcatactttactttttattttatcatttaaaataatgagtttgattatgaatcg |
608 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
1268438 |
tcacatattgactgtgggatcttgataagagatcgttcaaagaaaatcatactttactttttattttatcatttaaaatattgagcttgattataaatcg |
1268339 |
T |
|
| Q |
609 |
ttcgaagatcgaacaaacatgtaatttggcggagaaagttactcccaacattgttgagttgttaaaagcaaaatcagatgtgccaaaatctagatgaaac |
708 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
1268338 |
ttcgaagatcgaacaaacatgtagtttggcagagaaaattactcccaacattgttgagttgttaaaagcaaaatcagatgtgccaaaatccagaggaaac |
1268239 |
T |
|
| Q |
709 |
ccaaaaaaccaataaaatctacaagcatatatgattcaag |
748 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1268238 |
caaaaaaaccaataaaatctacaggcatatatgattcaag |
1268199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 95 - 322
Target Start/End: Complemental strand, 1266705 - 1266477
Alignment:
| Q |
95 |
tatatatagtctaaaagatgtggatttgaacttgggtcagtctcaagtttggttgagaactaaactcaacttcattttctttctaacgaggaaaagaatt |
194 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1266705 |
tatatatagtctagaagatgtggaatttaacttgggtcagtctcaagtttggttgagaactaaactcaacttcatt----ttctaatgaggaaaagaatt |
1266610 |
T |
|
| Q |
195 |
acaatgaaagaaattgttagtcatgaacgcttaaaaagcataaaa--------taaaagtgtgatttaccacgttaacacttcaataagtatgattccaa |
286 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||| || |||||||| ||| | |
|
|
| T |
1266609 |
gtcatgaaagaaattgttagtcatcaatacttaaaaagcataaaatcacctcgtaaaagtgtgatttaccacgtta--acttaaagaagtatgactcc-a |
1266513 |
T |
|
| Q |
287 |
tttttcactcacaaatgtaattttaccaatacgcaa |
322 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
1266512 |
tttttctctctcaaatgtaattttacctatacgcaa |
1266477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 1266439 - 1266348
Alignment:
| Q |
323 |
acaagactttaattgtggaaacatacatctacatcattttagatgtacacatccacaaaaatgtgacttttgtatcatctgaatgtacatttt |
415 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
1266439 |
acaagactttaattatgtaaacaaacatctacatcattttagatgtacacatttaaaaaaatgtgaattttgta-catctgaaagtacatttt |
1266348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 614 - 707
Target Start/End: Complemental strand, 1266061 - 1265968
Alignment:
| Q |
614 |
agatcgaacaaacatgtaatttggcggagaaagttactcccaacattgttgagttgttaaaagcaaaatcagatgtgccaaaatctagatgaaa |
707 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
1266061 |
agatcgaaagaacttgtagtttggcggagaaagttgctcccaacattatttagttgttaaaagcaatctcagatgtgccaatatctagaagaaa |
1265968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University