View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_11 (Length: 381)
Name: NF7792_low_11
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 28 - 369
Target Start/End: Original strand, 6088446 - 6088791
Alignment:
| Q |
28 |
aagtcttgaagctgatgaatggatcatgaaactagatgtctggctttcttgcctctacttgtgtgtggggatctcatttctctaagtctcctctcttgtg |
127 |
Q |
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| T |
6088446 |
aagtcttgaagctaatgaatggatcatgaaaccagatgcctggctttcttgcctctacttgtatgtggggatctcatttctctaagtctcctctcttgtg |
6088545 |
T |
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| Q |
128 |
aaagtatttttgctaacctgaatgtattagaataaaaatgttatctatg----taacaataattgtagcataattatactttgagtggtaattaaaatgt |
223 |
Q |
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| T |
6088546 |
aaagtatttttgctaacctgaatgtattagaataaatatgtcattaattaatataaaaataattgtaacataattataacttgagtggtaattaaaatgt |
6088645 |
T |
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| Q |
224 |
accatcactactggttaatcttaattacctcttgagagcatcttcattggtttctccatttgtcagtggctcaaagtggccattttccaaattgactcta |
323 |
Q |
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| T |
6088646 |
accgtctctactaatttatcttaattacctcttgagagcttcttcattggtttctccatttgtcagtggctcaaagtgaccattttctaaattgactcta |
6088745 |
T |
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| Q |
324 |
gagaccggtttctttaacaagttctcgccaatttggcacaggttct |
369 |
Q |
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| T |
6088746 |
gagaccggtttctttaataaattttcaccaatttggcacagtttct |
6088791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 46678426 - 46678358
Alignment:
| Q |
88 |
gtgtgtggggatctcatttctctaagtctcctctcttgtgaaagtatttttgctaacctgaatgtatta |
156 |
Q |
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| T |
46678426 |
gtgtgaggggatgtcaattctcgaagcttcctctcttgtgatagtatttttgcaaacctgcatgcatta |
46678358 |
T |
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