View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_12 (Length: 380)
Name: NF7792_low_12
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 41250153 - 41250500
Alignment:
| Q |
17 |
accaaataccttcataaatgcaccaaacatctccccgacatagagaacacccttcccattccatgactgcatgatgcagtttataaactaataacatcca |
116 |
Q |
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| T |
41250153 |
accaaataccttcataaatgcaccaaacatctccccgacatagagaacacccttcccattccatggctgcatgatgcagtttataa-ctaataacatcca |
41250251 |
T |
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| Q |
117 |
tagttcactatatatttcatttttccaaagggaggatgaattaacaatttaaagaaaaatcattcataagctatgtagcaccgacactggaattaaagac |
216 |
Q |
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| T |
41250252 |
tagttcactatatatttcatttttccaaagggaggctgaattaacaatttaaagaaaaatcattcataagctatgtagcaccgacactggaattaaagac |
41250351 |
T |
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| Q |
217 |
gtgtctgatatccgacatggcaacattacacgttagactcataagatatcagtttcattttgttaaattattaatttatttaagtgatagcgtcgtgttt |
316 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
41250352 |
gtgtatgatatccgacacatcaacattacactttagactc-taagatatcagtttcattttgttaaattattaatgtatttaagtgatagcgtcatgttt |
41250450 |
T |
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| Q |
317 |
gatttttgagtttatatcggtgcttcattgcctataagcttctcattggaacaccaaa |
374 |
Q |
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| T |
41250451 |
gatttttgagtttata--------tcattgcctataagcttctcattggaactccaaa |
41250500 |
T |
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