View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_13 (Length: 358)
Name: NF7792_low_13
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 19338859 - 19338520
Alignment:
| Q |
1 |
ttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatccttga |
100 |
Q |
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| T |
19338859 |
ttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatccttga |
19338760 |
T |
|
| Q |
101 |
attgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgattccaaaaaccacgatg |
200 |
Q |
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| T |
19338759 |
attgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgattccaaaaaccacgatg |
19338660 |
T |
|
| Q |
201 |
acagctgtttggaatctattttatacataatacaataattatgactatcaagttcatattaaacaacaataaaacgttaacgattacaaacaaaacacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19338659 |
acagctgtttggaatctattttatacataatacaataattatgactatcaagttcatattaaacaacaataaaacgttaacgattacaaacaaaacacat |
19338560 |
T |
|
| Q |
301 |
aagtaaatatcccnnnnnnnnccaaacataaacaagttta |
340 |
Q |
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| T |
19338559 |
aagtaaatatcccaaaaaaaaccaaacataaacaagttta |
19338520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18010694 - 18010555
Alignment:
| Q |
1 |
ttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatccttga |
100 |
Q |
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| T |
18010694 |
ttaaaattttgtcttgaattgaccataattgattgattcaagtgacagtgtgatcgagaaacaagttttcttaaatctcatctagatgttccatccttga |
18010595 |
T |
|
| Q |
101 |
attgaacttcacattaaccttcaagttaaaaacaaaatct |
140 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
18010594 |
attgaacttaacattaaccttcaagttaaaaacaaaatct |
18010555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19417523 - 19417470
Alignment:
| Q |
1 |
ttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat |
54 |
Q |
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||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
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| T |
19417523 |
ttaaaattttgtcctgaagtgaccataattgattgattcaagtgacagtgtgat |
19417470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 19323797 - 19323716
Alignment:
| Q |
59 |
aaacaagttttcttaaaactcatctagatgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatct |
140 |
Q |
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|||| ||||||| |||| | |||||| ||||||||||||||||||||||| |||| |||| |||| || |||||||||||| |
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| T |
19323797 |
aaaccagttttcgtaaatcccatctatatgttccatccttgaattgaactaaacatgaaccatcaacttcaaaacaaaatct |
19323716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18019245 - 18019202
Alignment:
| Q |
1 |
ttaaaattttgtcttcaagtaaccataattgattgattcaagtg |
44 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
18019245 |
ttaaaattttgtcttgaagtgaccataattgattgattcaagtg |
18019202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19379508 - 19379465
Alignment:
| Q |
1 |
ttaaaattttgtcttcaagtaaccataattgattgattcaagtg |
44 |
Q |
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||||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
19379508 |
ttaaaattttgtcttgaagtgaccataattgaatgattcaagtg |
19379465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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