View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7792_low_16 (Length: 347)
Name: NF7792_low_16
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 87 - 330
Target Start/End: Original strand, 20376999 - 20377242
Alignment:
| Q |
87 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
20376999 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcatcacttccataaggctgaatggcaagccctgg |
20377098 |
T |
|
| Q |
187 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttg |
286 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
20377099 |
tgtcggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattctgaacctacagatttg |
20377198 |
T |
|
| Q |
287 |
gactttgctccagtgtccgaaccagcatcatttcccacaacttc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20377199 |
gactttgctccagtgtccgaaccagcatcatttcccacaacttc |
20377242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 323
Target Start/End: Original strand, 20389371 - 20389607
Alignment:
| Q |
87 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
|
|
| T |
20389371 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctgg |
20389470 |
T |
|
| Q |
187 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttg |
286 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20389471 |
agtcggtgtcaccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattccgaacctacagatttg |
20389570 |
T |
|
| Q |
287 |
gactttgctccagtgtccgaaccagcatcatttccca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20389571 |
gactttgctccagtgtccgaaccagcatcatttccca |
20389607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 87 - 313
Target Start/End: Original strand, 20369070 - 20369296
Alignment:
| Q |
87 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
|
|
| T |
20369070 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctgg |
20369169 |
T |
|
| Q |
187 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttg |
286 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20369170 |
agtcggtgtcaccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattccgaacctacagatttg |
20369269 |
T |
|
| Q |
287 |
gactttgctccagtgtccgaaccagca |
313 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
20369270 |
gactttgctccagtgtccggaccagca |
20369296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 20347674 - 20347759
Alignment:
| Q |
87 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctga |
172 |
Q |
| |
|
|||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20347674 |
tcataccaatgggagccaaactctgcagttttccagaaccacgaggacgtccccttccacgcttctcctcacttccactaggctga |
20347759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University