View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_17 (Length: 312)
Name: NF7792_low_17
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 49061004 - 49061300
Alignment:
| Q |
16 |
aatatccacttaaggtatttcaatatgaacaatatgtctatacaaactgaaggacaaagnnnnnnnnnnnnnnnnntgatacctcaaaaagagctttcaa |
115 |
Q |
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| T |
49061004 |
aatatccacttaaggtatttcaatatgaacaatatgtctatactaactgaaggacaaagaaaacaaaaacaaaaaatgatacctcaaaaagagctttcaa |
49061103 |
T |
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| Q |
116 |
ttcagaatcttcaacctcactatcaatatttctcacaaataatgttctagaagggtgttcaccagaagggttttctacggcgaatgaggtgttacgagct |
215 |
Q |
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| T |
49061104 |
ttcagaatcttcaacctcactatcaatatttctcacaaataatgttctagaagggtgttcaccagaagggttttctacggcgaatgaggtgttacgagct |
49061203 |
T |
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| Q |
216 |
ttgtcgaggatttcacaattcttttctctaaaagatgaactatcgacatcttcaagatccaaaccgccattactactgaaaaggtctaaatcatctt |
312 |
Q |
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| T |
49061204 |
ttgtcgaggatttcacaattcttttctctaaaagatgaactatcgaaatcttcaagatccaaaccgccattactactgataaggtctaattcatctt |
49061300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 303
Target Start/End: Complemental strand, 6551894 - 6551685
Alignment:
| Q |
94 |
atacctcaaaaagagctttcaattcagaatcttcaacctcactatcaatatttctcacaaataatgttctagaagggtgttcaccagaagggttttctac |
193 |
Q |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| | |
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| T |
6551894 |
atacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaataatgttctagaagggtgttcgccataagagttttctcc |
6551795 |
T |
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| Q |
194 |
ggcgaatgaggtgttacgagctttgtcgaggatttcacaattcttttctctaaaagatgaactatcgacatcttcaagatccaaaccgccattactactg |
293 |
Q |
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| T |
6551794 |
ggcgattgagctattacgaactccactgatgatttcagaattcctttcaatagaggatggattttcaacgtctccaagatcaaaacctccattgctactg |
6551695 |
T |
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| Q |
294 |
aaaaggtcta |
303 |
Q |
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| T |
6551694 |
aaaaggtcta |
6551685 |
T |
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