View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_19 (Length: 299)
Name: NF7792_low_19
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_19 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 299
Target Start/End: Original strand, 34916021 - 34916297
Alignment:
| Q |
26 |
agttggcttaggagctaaaggactgttacttgaatttttcagctgcccgaacactgactgagaagagtcagaggggctcgacgactcgtccaaagctgtc |
125 |
Q |
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| T |
34916021 |
agttggcttaggagcaaaaggactgttacttgaatttttcagctgcccgaacactgactgagaagagtcagaggggctcgacgactcgtccaaagctgtc |
34916120 |
T |
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| Q |
126 |
nnnnnnnttgcatata---ttaatttataaacactatacttatgataacaacaacaaacaatgctaaataaataacaaacagctattgtccaataaatga |
222 |
Q |
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| T |
34916121 |
aaaaaaattgcatatagtattaatttataaacactatacttatgataacaacaacaaacaatgctaaataaataacaaacagctattgtccaataaatga |
34916220 |
T |
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| Q |
223 |
tcagttcaaacttgagaaccgcattctatgatcaagttcacacataatgctaaataatactccctccatttaacaat |
299 |
Q |
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| T |
34916221 |
tcagttcaaacttgagaaccgcattctatgatcaagctcacacataatgctaaataatactccctccatttaacaat |
34916297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 28542375 - 28542233
Alignment:
| Q |
156 |
ctatacttatgataacaacaacaaacaatgctaaataaataacaaacagctattgtccaataaatgatcagttcaaacttgagaaccgcattctatgatc |
255 |
Q |
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| T |
28542375 |
ctatacttatggtaacaacaacaaacaatgctaaataa-taataaactactattgtccactaaatgatcaattcaaacttgagaaccaccttctataatc |
28542277 |
T |
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| Q |
256 |
aagttcacacataatgctaaataatactccctccatttaacaat |
299 |
Q |
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| T |
28542276 |
aagttgacactaaaatctaaataatactctctccatttaacaat |
28542233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 28543952 - 28543827
Alignment:
| Q |
167 |
ataacaacaacaaacaatgctaaataaataacaaacagctattgtccaataaatgatcagttcaaacttgagaaccgcattctatgatcaagttcacaca |
266 |
Q |
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|||| ||||||||||| | |||||||| ||||| ||| |||||||||||||||| ||| |||||||| |||||| | |||| |||||||||| ||||||| |
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| T |
28543952 |
ataataacaacaaacagtactaaataa-taacagacaactattgtccaataaattatctgttcaaacatgagaatcacattttatgatcaagctcacaca |
28543854 |
T |
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| Q |
267 |
taatgctaaataatactccctccattt |
293 |
Q |
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| T |
28543853 |
taatgctaaataatactccctccattt |
28543827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 278
Target Start/End: Original strand, 34911153 - 34911273
Alignment:
| Q |
154 |
cactatacttatgataacaacaacaaacaatgctaaataaataacaaacagctattgtccaataaatgatcagttcaaacttgagaaccgcattctatga |
253 |
Q |
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| T |
34911153 |
cactatacttatgataacataaag---caatgctaaataa-taacaaacaactattgtccaataaattttcagttcaaactcgagaaccgcattctatga |
34911248 |
T |
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| Q |
254 |
tcaagttcacacataatgctaaata |
278 |
Q |
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| T |
34911249 |
tcaagctcagacagaatgctaaata |
34911273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 34910993 - 34911073
Alignment:
| Q |
29 |
tggcttaggagctaaaggactgttacttgaatttttcagctgcccgaacactgactgagaagagtcagaggggctcgacga |
109 |
Q |
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| T |
34910993 |
tggcttgggagcaaaaggactgttacttgaattgttctgctgcccaaacactgactgagaagagccagacgcgctcgacga |
34911073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 28544278 - 28544220
Alignment:
| Q |
30 |
ggcttaggagctaaaggactgttacttgaatttttcagctgcccgaacactgactgaga |
88 |
Q |
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| T |
28544278 |
ggcttaggagcaaaaggattgttacttgaattgttttgcagcccaaacactgactgaga |
28544220 |
T |
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