View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_20 (Length: 299)
Name: NF7792_low_20
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 14003254 - 14003537
Alignment:
| Q |
14 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg |
113 |
Q |
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| T |
14003254 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg |
14003353 |
T |
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| Q |
114 |
gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga |
213 |
Q |
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| T |
14003354 |
gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga |
14003453 |
T |
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| Q |
214 |
gcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagca |
297 |
Q |
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| T |
14003454 |
gcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagca |
14003537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 5767553 - 5767265
Alignment:
| Q |
14 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtg---ctagccagaaagagagacttgaattg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
5767553 |
tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttctaaacaagcggcgctagccagaaagagagacttgaattg |
5767454 |
T |
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| Q |
111 |
agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg |
210 |
Q |
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| T |
5767453 |
agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg |
5767354 |
T |
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| Q |
211 |
agagcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaac |
299 |
Q |
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| T |
5767353 |
agagcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgagagagagcagatcaccaagaaacaaagacaactcagcaac |
5767265 |
T |
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