View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_24 (Length: 267)
Name: NF7792_low_24
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 45108200 - 45107944
Alignment:
| Q |
1 |
acatgcttcagttccatgtataacaagatgcatgtttctaaaccctcgtttataattatatcgacaatgctatacaccgtgaatgttccattcatgaaat |
100 |
Q |
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| T |
45108200 |
acatgcttcagttccatgtataacaagatgcatgtttctaaaccctcatttataattatatcgacaatgctatacaccatgaatgttccattcatgaaat |
45108101 |
T |
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| Q |
101 |
aaggtctttaaattgaattcggatgaattaaggtaattgtaatcaatt--ttgtg---tg-gttattatttgtgtgtaggctgggctaattttaggacca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||| |||||||||||||||||||||||||||| |
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| T |
45108100 |
aaggtctttaaattgaattcggatgaattaaggtaattgtaatcaattgattgtgcattgtgttgttatttttgtgtaggctgggctaattttaggacca |
45108001 |
T |
|
| Q |
195 |
gcagtgccaatatttttggacctcaagatgaatttgtttccttatgggagtcaagac |
251 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45108000 |
gcagtgccaatatttttggacctcaagaggaatttgtttccttatgggagtcaagac |
45107944 |
T |
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