View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_25 (Length: 263)
Name: NF7792_low_25
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 45108580 - 45108316
Alignment:
| Q |
3 |
catgtccaataatattattaattctaatcttctgaactataatgtttgcatttccaccccgcctaatattctctcccatggcatatggggaaaacatgag |
102 |
Q |
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| T |
45108580 |
catgtccaacaatgttgttaattctaatcttctaaactataatgtttgcatttccaccccgcctaatattctctcccatggcatatggggaaaacatgag |
45108481 |
T |
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| Q |
103 |
accgaagggagtccattcaggtcctctttcccagtatttcttcatcaagtcattctaatttatgtcacaacaagggctatcaattttcctatcaagaagt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45108480 |
tccgaagggagtccattcaggtcctctttcccagtatttcttcatcaagtcattctaatttatgtcacaacaagggctatcaattttcctatcaagcagt |
45108381 |
T |
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| Q |
203 |
tgggtttacccaagctcatttcacaaatgatggtaactat----atatttaccctcaccataata |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45108380 |
tgggtttacccaagctcatttcacaaatgatggtaactatatatatatttaccctcaccataata |
45108316 |
T |
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