View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_27 (Length: 235)
Name: NF7792_low_27
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37893124 - 37893348
Alignment:
| Q |
1 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
100 |
Q |
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| T |
37893124 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
37893223 |
T |
|
| Q |
101 |
aaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccctctgattgggatcatgaggatacaagtgacacactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893224 |
aaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccctctgattgggatcatgaggatacaagtgacacactta |
37893323 |
T |
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| Q |
201 |
ttcttatgcttccaggttagttcat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
37893324 |
ttcttatgcttccaggttagttcat |
37893348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37188227 - 37188449
Alignment:
| Q |
1 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188227 |
aacataaccccatatttcatttcattcaccaacaagagcttagacaaattaagctacctttgctagaaacataaaagctaaagagaaaccaattaagcag |
37188326 |
T |
|
| Q |
101 |
aaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccaccctctgattgggatcatgaggatacaagtgacacactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
37188327 |
aaaatgtcttttgatcaaaagacacgtgaagctgatcgtatctatgatgaatttgaaccatcctctgattgggatcatgaggatacaagtgacacactaa |
37188426 |
T |
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| Q |
201 |
ttcttatgctt-ccaggttagtt |
222 |
Q |
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||||||||||| ||||||||||| |
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| T |
37188427 |
ttcttatgcttcccaggttagtt |
37188449 |
T |
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Back To:
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