View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_29 (Length: 220)
Name: NF7792_low_29
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 23466324 - 23466167
Alignment:
| Q |
19 |
aacaactatttagtttaatataggaaattagattcacactatattatgtgcatcattgtttgtctaaatattctcttgttgcc--attttattcagccgg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23466324 |
aacaactatttagtttaatataggaaattagattcacactatattatgtgcatcattgtttgtctaaatattctcttgttgccatattttattcagccgg |
23466225 |
T |
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| Q |
117 |
cgtcttacacattatgcatctgatctgaccacacataatgacaaattcataatgtcat |
174 |
Q |
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| T |
23466224 |
cgtcttacacattatgcatctgatctgaccacacatgatgacaaattcataatgtcat |
23466167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 23407664 - 23407500
Alignment:
| Q |
19 |
aacaactatttagtttaata---taggaaat---tagattcacactatattatgtgcatcattgtttgtctaaatattctcttgttgccat--tttattc |
110 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23407664 |
aacaactatttagtttaataatataggaaatatttagattcacactatattatgtgcatcattgtttgtctaaatattctcttgttgccatattttattc |
23407565 |
T |
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| Q |
111 |
agccggcgtcttacacattatgcatctgatctgaccacacataatgacaaattcataatgtcata |
175 |
Q |
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| T |
23407564 |
agccggcgtcttacacattatgcgtctgatctgaccacacataatgacaaattcataatgtcata |
23407500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 23429708 - 23429557
Alignment:
| Q |
19 |
aacaactatttagtttaatataggaaattagattcacactatattatgtgcatcattg-tttgtctaaatattctcttgttgcc--attttattcagccg |
115 |
Q |
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|||||||| |||||||| |||||||||||||||||||| || || ||||||| ||| ||| ||||||||| ||||||| ||| |||||||||||||| |
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| T |
23429708 |
aacaactacttagtttagtataggaaattagattcacatta---taagtgcatcgttgttttttctaaatatcctcttgtagccatattttattcagccg |
23429612 |
T |
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| Q |
116 |
gcgtcttacaca-ttatgcatctgatctgaccacacataatgacaaattcataat |
169 |
Q |
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| T |
23429611 |
gcgtcttaaacatttatgcatttgatcttaccacgcataccgacaaactcataat |
23429557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 23389919 - 23389768
Alignment:
| Q |
19 |
aacaactatttagtttaatataggaaattagattcacactatattatgtgcatcattgtttgt-ctaaatattctcttgttgccat--tttattcagccg |
115 |
Q |
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|||||||| |||||||| ||||||||| |||||||||| |||| ||||||| |||||| | |||||||| ||||||| ||||| |||||||||||| |
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| T |
23389919 |
aacaactacttagtttagtataggaaactagattcacattataa---gtgcatcgttgttttttctaaatatcctcttgtagccatattttattcagccg |
23389823 |
T |
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| Q |
116 |
gcgtcttacaca-ttatgcatctgatctgaccacacataatgacaaattcataat |
169 |
Q |
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| T |
23389822 |
tcgtcttaaacatttatgcatttgatcttaccacgcataccgacaaactcataat |
23389768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 23489475 - 23489411
Alignment:
| Q |
103 |
ttttattcagccggcgtcttacacatt-atgcatctgatctgaccacacataatgacaaattcat |
166 |
Q |
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||||||||| || |||||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
23489475 |
ttttattcacccagcgtcttacacatttatgcatctgatctgaccacgcatattgacaaattcat |
23489411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 23444470 - 23444429
Alignment:
| Q |
128 |
ttatgcatctgatctgaccacacataatgacaaattcataat |
169 |
Q |
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| T |
23444470 |
ttatgcatctgatctgaccacgcatattgacaaattcataat |
23444429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 23489633 - 23489582
Alignment:
| Q |
7 |
atggacatcatc-aacaactatttagtttaatataggaaattagattcacac |
57 |
Q |
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| T |
23489633 |
atggacctcatctaacagctatttagtttaatatagaaaattagattcacac |
23489582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 23436943 - 23436878
Alignment:
| Q |
31 |
gtttaatataggaaattagattcacactatattatgtgcatcattgtttgtctaaatattctcttgt |
97 |
Q |
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| T |
23436943 |
gtttaacataggaaactagattcacactata-tgtgtacatcattgttttcctaaatatcctcttgt |
23436878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 23444590 - 23444552
Alignment:
| Q |
19 |
aacaactatttagtttaatataggaaattagattcacac |
57 |
Q |
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| T |
23444590 |
aacaactatttactttaatatagaaaattagattcacac |
23444552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 23475576 - 23475532
Alignment:
| Q |
102 |
attttattcagccggcgtcttacaca-ttatgcatctgatctgac |
145 |
Q |
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|||||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
23475576 |
attttaatcagccggcgtcttgcacatttatgcatctgatctgac |
23475532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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