View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_3 (Length: 583)
Name: NF7792_low_3
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 49061305 - 49061877
Alignment:
| Q |
1 |
ctcatcctggagtagatttccaatagtttgagccttgagttcttcaagagagacacaaagcttctcttcctcataatgtgatgcaattgcatccactgaa |
100 |
Q |
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| T |
49061305 |
ctcatcctggagtagatttccaatagtttgagcctcgagttcttcaagagagacacaaagcttctcttcctcataatgtgatgcaattgcatccactgaa |
49061404 |
T |
|
| Q |
101 |
tgtccatgaaaagcattattcacagataatcgcactgtacgaaccgaagcatacaaagacatagcatattagtcaatagttttgacaagaaactttagca |
200 |
Q |
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| T |
49061405 |
tgtccatgtaaagcattattcacagataatcgcactgtacgaactgaagcatacaaagacatagcatattagtcaatagttttgacaagaaactttagca |
49061504 |
T |
|
| Q |
201 |
tacaatattgcaaagaaaacttacgtttcctgctaaacaaatctgatggagaacttgagaagagactactttcgtgccaagc----ggcaattatattaa |
296 |
Q |
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| T |
49061505 |
tacaattttgaaaagaaaacttacgtttcctgctaaacaaatctgatggagaacttgagaagagactactttcgtgccaagctagcggcaattatattaa |
49061604 |
T |
|
| Q |
297 |
cttcatcactatctgaaaaattggatactgcttgcataggttttattccaccatcaaaacctacatgggccatggcataacaaagtcaaagaataattgg |
396 |
Q |
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| T |
49061605 |
cttcatcactatctgaaaaattggatactgcttgcataggttttattccaccatcaaaacctacatgggccatggcataacaaagtcaaagaataattgg |
49061704 |
T |
|
| Q |
397 |
atgtaccgtttttaccaacaaactagagcatcaatgcttgtatatgaatgaggttatttctgtttcttattattataaccgacatgacttgaaatgttcc |
496 |
Q |
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| T |
49061705 |
atgtaccgtttttaccaacaaactagagcatcaatgcatgtatatgaatgaggttatttctgtttcttattattataaccgacatgacttgaaatgttcc |
49061804 |
T |
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| Q |
497 |
aagtacttagcatatgaatctactccaattagcataatatatatagaaactctaaagtaagtaccagtttttg |
569 |
Q |
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| T |
49061805 |
aagtactaagcatatgaatctactccaattagcataatatatatagaaactctaaagtaagtaccagtttttg |
49061877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 6551600 - 6551299
Alignment:
| Q |
9 |
ggagtagatttccaatagtttgagccttgagttcttcaagagagacacaaagcttctcttcctcataatgtgatgcaattgcatccactgaatgtccatg |
108 |
Q |
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| T |
6551600 |
ggagtagatttccaataatttgagcctcgagttcttcaagagagtcagaaagcttctcttcctcataatttgatgcaattgtatccactgaatgtccata |
6551501 |
T |
|
| Q |
109 |
aaaagcattattcacagataatcgcactgtacgaaccgaagcatacaaagacatagcatattagtcaatagttttgacaagaaactttagcatacaatat |
208 |
Q |
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| T |
6551500 |
gaaagcattattcgcagataatcgcactacaccaacagaaacatacaaagacatagtagattagccaacaattttcacagtaaactttagcataaaattt |
6551401 |
T |
|
| Q |
209 |
tgcaaagaaaacttacgtttcctgctaaacaaatctgatggagaacttgagaagagactactttcgtgccaagcggcaattatattaacttcatcactat |
308 |
Q |
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||||||||||||| || |||| |||| ||||||||||| ||||||||||||| || || |||||||||| || ||||| ||||| | |||| | ||||| |
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| T |
6551400 |
tgcaaagaaaactcacatttcttgctgaacaaatctgacagagaacttgagaaaaggctgctttcgtgccgagaggcaactatatcatcttctttactat |
6551301 |
T |
|
| Q |
309 |
ct |
310 |
Q |
| |
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|| |
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|
| T |
6551300 |
ct |
6551299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 443
Target Start/End: Complemental strand, 6551267 - 6551191
Alignment:
| Q |
367 |
catggcataacaaagtcaaagaataattggatgtaccgtttttaccaacaaactagagcatcaatgcttgtatatga |
443 |
Q |
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|||| ||||||||||||||||||||||||||||| | |||| | ||||||| || |||||||||| ||| ||||| |
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| T |
6551267 |
catgacataacaaagtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctatga |
6551191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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