View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_30 (Length: 215)
Name: NF7792_low_30
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 40207158 - 40206978
Alignment:
| Q |
17 |
aatatcagaatcaaggtatataactcgcttgacataaagaggaagaatatcagaaaggtagattcttgcatagttaagaggctgatccaatgcttgacga |
116 |
Q |
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| T |
40207158 |
aatatcagaatcaaggtatataactcgcttgacataaagaggaagaatatcagaaaggtagattcttgcatagttaagaggctgatccaatgcttgacga |
40207059 |
T |
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| Q |
117 |
atcgatttcgatatttttccgcgtaccctattggattcaaagcgataaatcttaaatttgaggtaagggaaggttgatctt |
197 |
Q |
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| T |
40207058 |
atcgatttcgatatttttccgtgtaccctattggattcaaagcgataaatcttaaatttgaggtaagggaaggttgatctt |
40206978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 37501237 - 37501356
Alignment:
| Q |
62 |
aatatcagaaaggtagattcttgcatagttaagaggctgatccaatgcttgacgaatcgatttcgatatttttccgcgtaccctattggattcaaagcga |
161 |
Q |
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| T |
37501237 |
aatatcagaaatatatattcttgcatagtttagaggctggtccaaggcctggcgaatggatttggagattttttcacgtaccctacttgattcaaatcga |
37501336 |
T |
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| Q |
162 |
taaatcttaaatttgaggta |
181 |
Q |
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| T |
37501337 |
tatatcttgaacttgaggta |
37501356 |
T |
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