View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_4 (Length: 532)
Name: NF7792_low_4
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 14 - 511
Target Start/End: Complemental strand, 43709558 - 43709062
Alignment:
| Q |
14 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
113 |
Q |
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| T |
43709558 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
43709459 |
T |
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| Q |
114 |
taagaatgaaaagttacgtggagaaagctgtgcagatggagatgctaaaggagaatgcggaagatatagcgttggaaatggagaggcttaagacaaaatt |
213 |
Q |
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| T |
43709458 |
taagaatgaaaagttacgtggagaaagatgtgcagatggagatgctgaaggagaatgcggaaggtatagcgttggaaatggagaggcttaagacaaaatt |
43709359 |
T |
|
| Q |
214 |
ggctactcttgaggtagatcttaacatagcaagagacttgttgatggaagaaggcttcaatgggatagatttgaatgttgaactaggatatgggatacca |
313 |
Q |
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| T |
43709358 |
ggctactcttgaggtagatcttaacatagcaagagacttgttgatggaagaaggcttcaatgggatagatttgaatgttgaactaggatatgggatacca |
43709259 |
T |
|
| Q |
314 |
tagacctctttctctacattaacatgcatgtttatatggatggatttttaatgtcttgaataaattgtgactgcttgtctatctctctaataatacaatg |
413 |
Q |
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| T |
43709258 |
tagacctctttctctacattaatatgcatgtttatatggatggatttttaatgtcttgaataaattgtgactgcttgtctatctctctaataatacaatg |
43709159 |
T |
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| Q |
414 |
ttattgcagattcatctgttgacaaccgtaagtctttttattatatatattcaactattgttcattgttcaatgcgtattgttgttgatccatctcag |
511 |
Q |
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| T |
43709158 |
ttattgcagattcatctgttgacaactg-aagtctttttattatatatattcaactattgttcattgttcaatgcgtattgttgttgatccatctcag |
43709062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 43695665 - 43695538
Alignment:
| Q |
14 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
113 |
Q |
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|||||||| || ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||||| || || |||||||||| ||||| |
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| T |
43695665 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
43695566 |
T |
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| Q |
114 |
taagaatgaaaagttacgtggagaaagc |
141 |
Q |
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| T |
43695565 |
taggaattaaaagctatgtggagaaagc |
43695538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 43707834 - 43707701
Alignment:
| Q |
14 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
113 |
Q |
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|||||||| ||| |||| |||||| | || |||||| ||||||||||||| |||| |||||||||| |||||||||||| |||||| ||| ||||| |
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| T |
43707834 |
atgaatgaccaaccttgtaaggatactaaagttttatacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctt |
43707735 |
T |
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| Q |
114 |
taagaatgaaaagttacgtggagaaagctgtgca |
147 |
Q |
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| T |
43707734 |
taggaatgaaaagttttgtggagaaagttgtgca |
43707701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 43691259 - 43691186
Alignment:
| Q |
34 |
ggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaat |
107 |
Q |
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||||||||||||||| |||||||||||| || |||||| |||||| || ||||||||||| ||||||||||| |
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| T |
43691259 |
ggatcttcaaattttttgggaggaacttcagccatttggttttgatttgtcttggctagagtatcatgttcaat |
43691186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 43696455 - 43696330
Alignment:
| Q |
14 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
113 |
Q |
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||||||||| |||||| ||||||||||||||||| ||||||||||||| | |||||| ||| || || ||||||| || ||||||||||| || | |
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| T |
43696455 |
atgaatgatttagcttgtaaggatcttcaaattttctgggaggaacttgggccatttggtttttatttgatatggctagggcttcatgttcaatcagcct |
43696356 |
T |
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| Q |
114 |
taagaatgaaaagttacgtggagaaa |
139 |
Q |
| |
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|| |||||||| |||| |||||||| |
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| T |
43696355 |
taggaatgaaatgttatttggagaaa |
43696330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 15827243 - 15827371
Alignment:
| Q |
14 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
113 |
Q |
| |
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|||||||| |||||||| |||||||||||| |||||||||||||||| | || |||| ||||||| | |||||||||| | |||||||| | ||||| |
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| T |
15827243 |
atgaatgaacaagcttgtaaggatcttcaagttttatgggaggaactagcgaaatttaaatttgatattacttggctagaatcgcatgttcactatgctt |
15827342 |
T |
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| Q |
114 |
taagaatgaaaagttacgtggagaaagct |
142 |
Q |
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|| |||| ||||| ||| ||||||||||| |
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| T |
15827343 |
taggaataaaaagatacatggagaaagct |
15827371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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