View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_7 (Length: 445)
Name: NF7792_low_7
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 41863812 - 41864158
Alignment:
| Q |
1 |
acggaataatgtggatctaaaatggaaacatacatgtcataggatacatcacctatatattattagatgatacaaatagtgatatattaaccaaatttat |
100 |
Q |
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| T |
41863812 |
acggaataatgtggatctaaaatggaaacatacatgtcataggatacatcacctatatattattagatgatacaaatagtgatatattaaccaaatttac |
41863911 |
T |
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| Q |
101 |
cttttaataccactttactttgtgagttaaaccatccttcaatcacacattcgtaggaaagcattgaaacacttatttacattccaagcaattggtgagt |
200 |
Q |
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| T |
41863912 |
cttttaataccactttactttgtgagttaaaccatccttcaatcacacattcgtaggaaagcattgaaacacttattcacattccaagcaattcgtgagt |
41864011 |
T |
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| Q |
201 |
catattagtggattctttggcagaacttagacttcaaaatcaattactcattcaacctaccnnnnnnncccatgacaattgactatgtagtttcagaagt |
300 |
Q |
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| T |
41864012 |
catattagtggattctttggcagaacttagccttgaaaatcaattactcattcaacctacc--aaaaacccatgacaattgactatgtagtttcagaagt |
41864109 |
T |
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| Q |
301 |
caattattgaaggacaaaaatgttattacatacaaattttaatttctaa |
349 |
Q |
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| T |
41864110 |
caattattgaaggacaaaaatgttattacatacaaattttaatttctaa |
41864158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 41889951 - 41890009
Alignment:
| Q |
370 |
ctttggtatccttgcagtttcagaagaatgcattgtctttctaggatcaacttcaattg |
428 |
Q |
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| T |
41889951 |
ctttggtatccttgcagtttcagaagaatgcattgtctttctaggatcaacttcaattg |
41890009 |
T |
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