View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7792_low_9 (Length: 390)
Name: NF7792_low_9
Description: NF7792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7792_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 26098393 - 26098757
Alignment:
| Q |
18 |
acatttaaatatgccaacattagatttagaccacttgttgctacctacgtgcctttgttgagagacgaattatatgcacgtaggatagattcttttagga |
117 |
Q |
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| T |
26098393 |
acatttaaatatgccaacattagatttagaccacttgttgctacctacgtgcctttgttgagagacgaattatatgcacgtaggatagattcttttagga |
26098492 |
T |
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| Q |
118 |
atgttgagaggtcttgcaacaaatattcatatgtatttatttattcgcagatggagtttcaaatacgatataaaactttcacatacaaaagtgtgatcca |
217 |
Q |
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| T |
26098493 |
atgtttagaggtcttgcaacaaatattcatatgtatttctttattcgcagatggagtttcaaatacgatataaaactttcacatacaaaagtgtgatcca |
26098592 |
T |
|
| Q |
218 |
aagtctaacctgaaacaccaatatcaaatctagcctacatgggatcaatttcaacaaaatatttggtggcagttgatagtaacaatatcgatttttggtt |
317 |
Q |
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|||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26098593 |
aagtctaacccgaaacaccaatatccaatctagccttaatgggatcaatttcaacaaaatatttggtggcagttgacagtaacaatatcgatttttggtt |
26098692 |
T |
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| Q |
318 |
ggacaaatggatttttagtggaacttctcttatttccatcactaaccaagctagcatcaacacga |
382 |
Q |
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| T |
26098693 |
ggactaatggatttttagtggaacttctcttatttccatcactaaccaaactagcatcaacacga |
26098757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 382
Target Start/End: Original strand, 26085039 - 26085125
Alignment:
| Q |
296 |
gtaacaatatcgatttttggttggacaaatggatttttagtggaacttctcttatttccatcactaaccaagctagcatcaacacga |
382 |
Q |
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| T |
26085039 |
gtaacaatatcaatttttgcctggacaattggatttttagtggaaattctcttatctccatcaccaaccaaactagcatcaacacga |
26085125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 26076772 - 26076842
Alignment:
| Q |
179 |
aatacgatataaaactttcacatacaaaagtgtgatccaaagtctaacctgaaacaccaatatcaaatcta |
249 |
Q |
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| T |
26076772 |
aatacgacataaaactcacacatacaaaagtgtgatccaaagtctaacacagaacaccaatatccaatcta |
26076842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 26076664 - 26076705
Alignment:
| Q |
121 |
ttgagaggtcttgcaacaaatattcatatgtatttatttatt |
162 |
Q |
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| T |
26076664 |
ttgagaggtcttgcaacaaatattcatatgtatttctttatt |
26076705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 26076451 - 26076506
Alignment:
| Q |
18 |
acatttaaatatgccaacattagatttagaccacttgttgctacctacgtgccttt |
73 |
Q |
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|||||||||| | ||||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
26076451 |
acatttaaatttaccaacattagatttagatcacttgttgttacctacatgccttt |
26076506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 362
Target Start/End: Complemental strand, 48898884 - 48898775
Alignment:
| Q |
257 |
tgggatcaatttcaacaaaatatttggtggcagtt----gatagtaacaatatcgatttttggttggacaaatggatttttagtggaacttctcttattt |
352 |
Q |
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||||| |||||||||||||||||| ||||||||| ||| |||| ||||| |||||||| |||| |||||| | |||||||||||||||||| | |
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| T |
48898884 |
tgggaacaatttcaacaaaatattgtgtggcagttgggcgatggtaataatattaatttttggatggataaatgggctcctagtggaacttctcttatgt |
48898785 |
T |
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| Q |
353 |
ccatcactaa |
362 |
Q |
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|||| ||||| |
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| T |
48898784 |
ccattactaa |
48898775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 15886961 - 15886907
Alignment:
| Q |
20 |
atttaaatatgccaacattagatttagaccacttgttgctacctacgtgcctttg |
74 |
Q |
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|||||||| |||| ||||||| || ||||||||||||| ||||||| |||||||| |
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| T |
15886961 |
atttaaatttgccgacattaggttaagaccacttgttgttacctacatgcctttg |
15886907 |
T |
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