View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7793_high_1 (Length: 648)
Name: NF7793_high_1
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 249 - 639
Target Start/End: Complemental strand, 26146919 - 26146531
Alignment:
| Q |
249 |
taacatgtttgtcaataaaataagtgcacttgatgaagctgaatttgttgttacaactcattgttgagacttttggagagtcgaaaacgctgagtgaatc |
348 |
Q |
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| T |
26146919 |
taacatgtttgtcaataaaataagtgcacttgatgcagctgaatttgttgttacaactcattgttgagacttttggagagtcgaaaacgctgagtgaatc |
26146820 |
T |
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| Q |
349 |
atcgaccatattatactaaaaacattaacattagactaagatattagatatatgattcttcttacatatatattgtttaacgtctaannnnnnnatctat |
448 |
Q |
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| T |
26146819 |
atcgaccatattgcactcaaaacattaacattagactaagatattagatatatgattcttctcacatatat--tgtttaacgtctaattttttcatctat |
26146722 |
T |
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| Q |
449 |
ttatgaatactcgacaccaactcccatctcatatcttggatttgtttttaaaacctcaatgttgtttaatagtttttgaccacactttcaaaagttaggt |
548 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
26146721 |
ttaagaatactcgacaccaactcccatctcatatcttggatttgtttttaaaacctcaatgttttttaatagttttggaccacactttcaaaagttaggt |
26146622 |
T |
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| Q |
549 |
cgtaagatgaatgtgtccaaaaacatatatacaccaaacaactcggaacacgacaatgtaagtccagaaaacaactcgattatcctctatg |
639 |
Q |
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| T |
26146621 |
cgtaagatgaatgtgtccaaaatcatatatacaccgaacaattcggaacacgacaatgtaagtccaaaaaacaactcgattatccactatg |
26146531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 26147179 - 26146948
Alignment:
| Q |
19 |
aagaagctttacattgaattgcggcagcagtcacaataacactaccannnnnnngtctaaaaatttaacggtgaaactcacacacactaagtaataccgt |
118 |
Q |
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| T |
26147179 |
aagaagctttacattgaattgcggcagcagtcacaataatactaccatttttttgtctaaaaatttaacggtaaaactcacacacactaagtaataccgt |
26147080 |
T |
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| Q |
119 |
gagatatcacattacaatttttgaaaatgtgagaagcagtaatcaaatgcaagtgatgggttataagcatataacttggtcgtg-----aaggacactag |
213 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26147079 |
gagatatcacattacgatttttgaaaatgtgagaagcagtaatcaaatgcaagagatgggttataagcatataacttggtcgtgagctaaaggacactag |
26146980 |
T |
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| Q |
214 |
tagagttattttgtgggtcaggagttcaaatt |
245 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
26146979 |
aagagctattttgtgggtcaggagttcaaatt |
26146948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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