View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7793_high_11 (Length: 290)
Name: NF7793_high_11
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 5145997 - 5145727
Alignment:
| Q |
1 |
aaatcatgttagggtcataatattgtactccttagctatctttttctttcttttaatagcactccctagctatataatggtcccggtgactaatatctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5145997 |
aaatcatgttagggtcataatattgtactccttagctatctttttctttcttttaatagcactccctagctatataatggtcccggtgactaatatctaa |
5145898 |
T |
|
| Q |
101 |
gtttattgtatgttgtagagggtattggggacacttaaacgaggatttcacatgccataataaccctttctttactacaaaccacgtggcctttcctatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5145897 |
gtttattgtatgttgtagagggtattggggacacttaaacgaggatttcacatgccataataaccctttctttactacaaaccacgtggcctttcctatc |
5145798 |
T |
|
| Q |
201 |
ttttgccccttttttaaatacttcaatatctaaactaactcgagggtaacttcaataacacgtgagagtag |
271 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5145797 |
ttttgccccttttttaaatacttcaatatttaaactaactcgagggtaacttcaataacacgtgagagtag |
5145727 |
T |
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