View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7793_high_12 (Length: 253)
Name: NF7793_high_12
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 19536281 - 19536518
Alignment:
| Q |
1 |
tgtacacaattgcgaatactactggctcggattgcattcatatggttaagattcaaattcaagttcagatttgaattcaagactactaaataagctggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19536281 |
tgtacacaattgcgaatactactggctcggattgcattcatatggttaagattcaaattcaagttcagatttgaattcaagactactaaataagctggaa |
19536380 |
T |
|
| Q |
101 |
ggaaggatctttactatcttatctaaacaattttaattatttaaattagactattttcttgtcagccgaattagaatatttttaaatagtttatcaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19536381 |
ggaaggatctttactatcttatctaaacaattttaattatttaaattagagtattttcttgtcagccgaattagaatatttttaaatagtttatcaaaaa |
19536480 |
T |
|
| Q |
201 |
tatattaaatgaattttgttttgggcatatgattttat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19536481 |
tatattaaatgaattttgttttgggcatatgattttat |
19536518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 43525474 - 43525509
Alignment:
| Q |
177 |
tatttttaaatagtttatcaaaaatatattaaatga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43525474 |
tatttttaaatagtttatcaaaaatatattaaatga |
43525509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University