View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7793_high_6 (Length: 365)

Name: NF7793_high_6
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7793_high_6
NF7793_high_6
[»] chr4 (21 HSPs)
chr4 (205-365)||(54918929-54919091)
chr4 (42-154)||(54919113-54919225)
chr4 (220-342)||(10065070-10065196)
chr4 (217-305)||(20783696-20783784)
chr4 (221-348)||(20291780-20291911)
chr4 (217-344)||(38562128-38562259)
chr4 (31-152)||(54922025-54922147)
chr4 (217-270)||(20291789-20291842)
chr4 (217-270)||(23673436-23673489)
chr4 (13-50)||(54921451-54921488)
chr4 (220-304)||(6371925-6372009)
chr4 (257-309)||(17236164-17236216)
chr4 (221-311)||(52378713-52378803)
chr4 (217-270)||(7277496-7277549)
chr4 (216-265)||(30920794-30920843)
chr4 (217-270)||(44626477-44626530)
chr4 (220-340)||(23673367-23673490)
chr4 (241-311)||(44626428-44626498)
chr4 (217-270)||(52840275-52840328)
chr4 (316-344)||(2181573-2181601)
chr4 (217-269)||(39993123-39993175)
[»] chr1 (17 HSPs)
chr1 (205-344)||(8900796-8900939)
chr1 (218-344)||(41944772-41944902)
chr1 (217-342)||(35489201-35489330)
chr1 (221-339)||(5368782-5368903)
chr1 (205-304)||(37247618-37247717)
chr1 (221-340)||(5700043-5700168)
chr1 (241-341)||(49166639-49166743)
chr1 (217-268)||(51171338-51171389)
chr1 (217-269)||(882933-882985)
chr1 (217-269)||(4604919-4604971)
chr1 (217-342)||(24419540-24419669)
chr1 (217-304)||(5346969-5347056)
chr1 (211-269)||(21945059-21945117)
chr1 (217-266)||(5700118-5700167)
chr1 (217-270)||(8900801-8900854)
chr1 (239-304)||(11900874-11900939)
chr1 (217-270)||(24419613-24419666)
[»] chr7 (7 HSPs)
chr7 (221-342)||(2399704-2399829)
chr7 (217-342)||(34670357-34670485)
chr7 (219-304)||(23097511-23097595)
chr7 (217-268)||(3094417-3094468)
chr7 (221-269)||(2635678-2635726)
chr7 (252-304)||(15996162-15996214)
chr7 (217-272)||(45444725-45444781)
[»] chr2 (9 HSPs)
chr2 (217-312)||(43445068-43445163)
chr2 (217-342)||(41517368-41517497)
chr2 (217-303)||(27279494-27279580)
chr2 (221-273)||(41221706-41221758)
chr2 (252-311)||(33956328-33956387)
chr2 (217-270)||(29168580-29168633)
chr2 (217-270)||(33956366-33956419)
chr2 (217-269)||(472419-472471)
chr2 (217-342)||(29168507-29168636)
[»] chr6 (9 HSPs)
chr6 (217-310)||(9910535-9910628)
chr6 (217-304)||(26296255-26296342)
chr6 (221-304)||(862833-862916)
chr6 (217-304)||(16260669-16260756)
chr6 (221-285)||(24252896-24252961)
chr6 (219-315)||(31159086-31159182)
chr6 (217-299)||(5069947-5070029)
chr6 (241-270)||(31159157-31159186)
chr6 (217-269)||(3846438-3846490)
[»] scaffold0514 (1 HSPs)
scaffold0514 (217-305)||(5827-5915)
[»] chr8 (12 HSPs)
chr8 (217-339)||(6590790-6590916)
chr8 (221-305)||(14113258-14113342)
chr8 (221-305)||(6649118-6649202)
chr8 (217-305)||(44329164-44329252)
chr8 (221-341)||(30542473-30542596)
chr8 (217-304)||(30358623-30358713)
chr8 (217-304)||(1784096-1784183)
chr8 (234-304)||(24185578-24185648)
chr8 (217-269)||(2602060-2602112)
chr8 (217-270)||(6616590-6616643)
chr8 (217-270)||(27988086-27988139)
chr8 (217-270)||(28045388-28045441)
[»] chr5 (12 HSPs)
chr5 (219-311)||(30046346-30046438)
chr5 (217-315)||(14509856-14509954)
chr5 (217-311)||(28499789-28499883)
chr5 (217-304)||(8355556-8355643)
chr5 (233-342)||(14751148-14751261)
chr5 (217-298)||(11089345-11089426)
chr5 (217-270)||(18200668-18200721)
chr5 (217-305)||(8567921-8568009)
chr5 (224-308)||(19522560-19522644)
chr5 (217-269)||(28499863-28499914)
chr5 (221-273)||(35463964-35464016)
chr5 (217-269)||(43221642-43221694)
[»] chr3 (7 HSPs)
chr3 (217-344)||(16867625-16867756)
chr3 (217-348)||(29212850-29212985)
chr3 (217-344)||(18093785-18093916)
chr3 (231-337)||(10937919-10938028)
chr3 (217-270)||(30122035-30122088)
chr3 (217-269)||(25108987-25109039)
chr3 (218-295)||(27696621-27696698)
[»] scaffold0470 (1 HSPs)
scaffold0470 (217-270)||(5876-5929)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 205 - 365
Target Start/End: Complemental strand, 54919091 - 54918929
Alignment:
Q  205 tattctctttgttcacatttataagtaaaaaa-tgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattat 303  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  54919091 tattctcttcgttcacatttataagtaaaaaaatgactttttaagtacattgaataactaatgtatccggtcacgtttataggttagatacattaattat 54918992  T
Q  304 tgaatatacttagttgtt-ttttgtttataaatgtgaccgaaatgaatatgaaacgattaacc 365  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||    
T  54918991 tgaatgtacttagttgtttttttgcttataaatgtgaccgaaaggagtatgaaacgattaacc 54918929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 54919225 - 54919113
Alignment:
Q  42 cattaaagatcgaatgcacataaaagtggtttatggaggttttgtaatgtatgcatgcttacatagacatgtgtaattaatgaattaacattgaaaaatg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54919225 cattaaagatcgaatgcacataaaagtggtttatggaggttttgtaacgtatgcatgcttacatagacatgtgtaattaatgaattaacattgaaaaatg 54919126  T
Q  142 gtagcagtctatt 154  Q
    |||||||||||||    
T  54919125 gtagcagtctatt 54919113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 10065196 - 10065070
Alignment:
Q  220 catttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----a 315  Q
    |||||||||| |||||||||||||||| ||| ||||||||| ||||||||||| |||  |||||  |||| ||||||||||||||| || ||| |    |    
T  10065196 catttataagcaaaaaatgactttttaggtacattgaataattaatgtatccgaccatatttatgagttagatacattaattattggatgtacctaaaaa 10065097  T
Q  316 gttgttttttgtttataaatgtgaccg 342  Q
    ||||||||||| |||||||||||||||    
T  10065096 gttgttttttgcttataaatgtgaccg 10065070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 20783696 - 20783784
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 305  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |  ||| |||||   |||||||||||||||||||    
T  20783696 tcacatttataaataaaaaatgactttttaagtacattgaataattaatgtatctgatcacatttatgtattaaatacattaattattg 20783784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 348
Target Start/End: Complemental strand, 20291911 - 20291780
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----ag 316  Q
    ||||||||| ||||||| ||||||||  | ||||||||||||||||||||| | |    |||||| | | |||||||| ||||| |||||||||    ||    
T  20291911 atttataagcaaaaaataactttttagatttattgaataactaatgtatccagtcgtaattatagatcagatacattagttatttaatatacttaaaaag 20291812  T
Q  317 ttgttttttgtttataaatgtgaccgaaatga 348  Q
    |||||||||| ||||||||||||| |||||||    
T  20291811 ttgttttttgcttataaatgtgactgaaatga 20291780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 344
Target Start/End: Complemental strand, 38562259 - 38562128
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||| ||||||  | ||||||  || ||||||||| |||||||||||| ||| ||||||||  | |||||||||||||| ||| ||  |      
T  38562259 tcacatttataagcaaaaaacaattttttagatacattgaataattaatgtatccggtcacatttataggacatatacattaattattcaatgtatctaa 38562160  T
Q  315 --agttgttttttgtttataaatgtgaccgaa 344  Q
      |||||||||||| |||||||||||||||||    
T  38562159 caagttgttttttgcttataaatgtgaccgaa 38562128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 54922147 - 54922025
Alignment:
Q  31 ttggaaaatggcattaaagatcgaatgcacataaaagtggttta-tggaggttttgtaatgtatgcatgcttacatagacatgtgtaattaatgaattaa 129  Q
    |||||||||| |||||| ||| |||||  || | ||||| |||  |||| |||||||||||| |||||||||| ||||||||||||| |||||||||||     
T  54922147 ttggaaaatgacattaaggattgaatgtgcagagaagtgattttgtggacgttttgtaatgtctgcatgcttagatagacatgtgtagttaatgaattag 54922048  T
Q  130 cattgaaaaatggtagcagtcta 152  Q
    ||| | |||||| ||| ||||||    
T  54922047 catcggaaaatgatagtagtcta 54922025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 20291789 - 20291842
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||  |||||||||||||||| |||||||||||||||    
T  20291789 tcacatttataagcaaaaaacaactttttaagtatattaaataactaatgtatc 20291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 23673489 - 23673436
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||    
T  23673489 tcacatttataagcaaaaaataactttttaggtatattgaataattaatgtatc 23673436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 54921488 - 54921451
Alignment:
Q  13 gagatgaaggattaagtcttggaaaatggcattaaaga 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54921488 gagatgaaggattaagtcttggaaaatggcattaaaga 54921451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 6371925 - 6372009
Alignment:
Q  220 catttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    |||||||||| |||||||||||||||| ||| ||||||||| ||||||||  ||  || ||||| ||||| |||||||| |||||    
T  6371925 catttataagcaaaaaatgactttttaggtacattgaataattaatgtatatggttacatttatgggttagatacattagttatt 6372009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 17236164 - 17236216
Alignment:
Q  257 ataactaatgtatccggccacgtttataggttaaatacattaattattgaata 309  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  17236164 ataattaatgtatccggtcacatttataggttaaatacattaattattcaata 17236216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 52378803 - 52378713
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 311  Q
    ||||||||| ||||||||||| ||||  |||||||||||| ||||||||  |  ||| |||||  |||| ||||||||||||||| |||||    
T  52378803 atttataagcaaaaaatgactctttagatatattgaataattaatgtatttgatcacatttatgagttagatacattaattattggatata 52378713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 7277549 - 7277496
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    |||||||||||||  ||||| |||||||||||| |||||||||||| |||||||    
T  7277549 tcacatttataagcgaaaaacgactttttaagtttattgaataactcatgtatc 7277496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 30920843 - 30920794
Alignment:
Q  216 ttcacatttataagtaaaaaatgactttttaagtatattgaataactaat 265  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  30920843 ttcacatttataagcaaaaaataattttttaagtttattgaataactaat 30920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 44626530 - 44626477
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||  ||||||||    
T  44626530 tcacatatataagcaaaaaatgactttttaaatatattgaataatcaatgtatc 44626477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 340
Target Start/End: Original strand, 23673367 - 23673490
Alignment:
Q  220 catttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----a 315  Q
    |||||||||| ||||||| ||||||||| || || |||||| ||||||||  || ||| | |||| || | |||||||||||||| ||||||| |    |    
T  23673367 catttataagcaaaaaataactttttaa-tacatcgaataattaatgtatttggtcacatatatatgtcagatacattaattattcaatatacctaaaaa 23673465  T
Q  316 gttgttttttgtttataaatgtgac 340  Q
    ||| ||||||| |||||||||||||    
T  23673466 gttattttttgcttataaatgtgac 23673490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 44626428 - 44626498
Alignment:
Q  241 tttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 311  Q
    |||||||||||||||||||| |||| |||  || ||| || |||||||| ||||||| |||||| ||||||    
T  44626428 tttttaagtatattgaataattaatttatgtggtcacattcataggttagatacattgattattcaatata 44626498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 52840275 - 52840328
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||| | |||||||||| ||| ||||| |||||||||    
T  52840275 tcacatttataagcaaaaaataattttttaagtacattaaataattaatgtatc 52840328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 2181601 - 2181573
Alignment:
Q  316 gttgttttttgtttataaatgtgaccgaa 344  Q
    |||||||||||||||||||||||||||||    
T  2181601 gttgttttttgtttataaatgtgaccgaa 2181573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 39993175 - 39993123
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||||||||||| ||||||||  |  ||||||||| ||||||||    
T  39993175 tcacatttataagtaaaaaataactttttagattcattgaataattaatgtat 39993123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 8900939 - 8900796
Alignment:
Q  205 tattctctttgttcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    |||||||| || | ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||    
T  8900939 tattctctctggtaacatttataagtaaaaaattactttttaggtatattgaataattaatgtatccggtcacatttataggttagatacattaattatt 8900840  T
Q  305 gaatatactt----agttgttttttgtttataaatgtgaccgaa 344  Q
     ||| ||| |    |||||||| ||  |||||||||||||||||    
T  8900839 caatgtacctaaaaagttgtttattacttataaatgtgaccgaa 8900796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 344
Target Start/End: Complemental strand, 41944902 - 41944772
Alignment:
Q  218 cacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt--- 314  Q
    |||||||||||| ||| ||||| |||||||||| | ||||||| ||||||| |||| ||| ||||| ||||| ||||||||||||||| |||||| |       
T  41944902 cacatttataagcaaataatgattttttaagtacaatgaataattaatgtacccggtcacatttatgggttagatacattaattattggatatacctaaa 41944803  T
Q  315 -agttgttttttgtttataaatgtgaccgaa 344  Q
     |||||||||||| |||||||||||||||||    
T  41944802 aagttgttttttgcttataaatgtgaccgaa 41944772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 35489330 - 35489201
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||| ||||| ||| ||  |  ||||||||||| |||||||||||||| ||| ||  |      
T  35489330 tcacatttataagcaaaaaatgactttttatgtacattgaataattaatgaatctggtgatatttataggttagatacattaattattcaatgtatctaa 35489231  T
Q  315 --agttgttttttgtttataaatgtgaccg 342  Q
      |||||||||||| |||||||||||||||    
T  35489230 aaagttgttttttgattataaatgtgaccg 35489201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 5368903 - 5368782
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt---agt 317  Q
    ||||||||| ||||| | ||||||||  |  ||||||||| |||||||||||| ||| ||||| ||||| ||||||||||||||| || ||| |   |||    
T  5368903 atttataagcaaaaattaactttttagatgcattgaataattaatgtatccggtcacatttatgggttagatacattaattattggatgtacataaaagt 5368804  T
Q  318 tgttttttgtttataaatgtga 339  Q
    | ||||||| ||||||||||||    
T  5368803 tattttttgcttataaatgtga 5368782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 37247717 - 37247618
Alignment:
Q  205 tattctctttgttcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    |||||| |||| ||||||||||||||||||||| ||||||||| || ||| ||||| |||  ||| | |  || ||||||||||| ||||||||||||||    
T  37247717 tattctttttggtcacatttataagtaaaaaataactttttaaatacatttaataattaacatatacagttacatttataggttagatacattaattatt 37247618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 340
Target Start/End: Original strand, 5700043 - 5700168
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtata--ttgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt---- 314  Q
    ||||||||| |||||||  |||||||| ||||  |||||||| |||||||||||  ||  ||||||| | |||| ||||||||||| ||| |||||        
T  5700043 atttataagcaaaaaatagctttttaattatatattgaataattaatgtatccgatcatatttatagatcaaatgcattaattattcaatgtacttaaaa 5700142  T
Q  315 agttgttttttgtttataaatgtgac 340  Q
    |||||||||||| |||||||||||||    
T  5700143 agttgttttttgcttataaatgtgac 5700168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 49166639 - 49166743
Alignment:
Q  241 tttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----agttgttttttgtttataaatg 336  Q
    |||||| ||| ||| ||||| |||||||||| | ||| ||||||||||| |||||||||||||| ||| ||  |    |||||||||||| |||||||||    
T  49166639 tttttaggtacattaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgtaactaaaaagttgttttttgcttataaatg 49166738  T
Q  337 tgacc 341  Q
    |||||    
T  49166739 tgacc 49166743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 51171389 - 51171338
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgta 268  Q
    ||||||||||||||||||||| |||||||||||  ||| |||||||||||||    
T  51171389 tcacatttataagtaaaaaataactttttaagttcattaaataactaatgta 51171338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 882933 - 882985
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    |||||||||||||||||| || |||||||| ||  ||||||||||||||||||    
T  882933 tcacatttataagtaaaatataactttttaggttcattgaataactaatgtat 882985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 4604971 - 4604919
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||| ||||||| |||||||| || ||||||||| |||||||||    
T  4604971 tcacatttataagcaaaaaatcactttttaggtttattgaatacctaatgtat 4604919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 24419540 - 24419669
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta- 315  Q
    ||||||||||||| ||||||  ||||||||  |  |||||| ||||||||||||| | ||   ||||| || | |||||||||||||| ||| ||| ||     
T  24419540 tcacatttataagcaaaaaagaactttttagattcattgaagaactaatgtatccagtcataattataagtcagatacattaattattcaatgtacctaa 24419639  T
Q  316 ---gttgttttttgtttataaatgtgaccg 342  Q
       ||||||||||| |||||||||||||||    
T  24419640 aaagttgttttttgcttataaatgtgaccg 24419669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 5346969 - 5347056
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||||||| |||||||| |||||||  || ||||||||| ||||||||||   ||| ||||||  ||| ||| ||||||||||    
T  5346969 tcacatttataagcaaaaaatgtctttttagatacattgaataattaatgtatccattcacatttatatattagatatattaattatt 5347056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 21945059 - 21945117
Alignment:
Q  211 ctttgttcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||| ||||||||||||||||||||| ||||||||  |  |||||||| |||||||||    
T  21945059 ctttgatcacatttataagtaaaaaatcactttttagattcattgaatacctaatgtat 21945117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 5700167 - 5700118
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatg 266  Q
    ||||||||||||| ||||||  |||||||||||| ||||||||| |||||    
T  5700167 tcacatttataagcaaaaaacaactttttaagtacattgaataattaatg 5700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 8900801 - 8900854
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    |||||||||||||||| |||  |||||||| ||| ||||||||| |||||||||    
T  8900801 tcacatttataagtaataaacaactttttaggtacattgaataattaatgtatc 8900854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 11900939 - 11900874
Alignment:
Q  239 actttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||  || ||||||||| |||| |||| || ||| ||||||||| ||||||||||||||||    
T  11900939 actttttagatacattgaataattaatatatctggtcacatttataggtcaaatacattaattatt 11900874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 24419666 - 24419613
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||| |||||||||    
T  24419666 tcacatttataagcaaaaaacaactttttaggtacattgaataattaatgtatc 24419613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 342
Target Start/End: Complemental strand, 2399829 - 2399704
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----ag 316  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||| |||||| |||| ||||||||| |||| ||| |||||    ||    
T  2399829 atttataaataaaaaataactttttaagtatattgaataattaatgtatccggtcacatttataagttagatacattaactattcaatgtacttagaaag 2399730  T
Q  317 ttgttttttgtttataaatgtgaccg 342  Q
    |||||||||| |||||||||||||||    
T  2399729 ttgttttttgcttataaatgtgaccg 2399704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 34670485 - 34670357
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||| |||||||||| |||||| || ||||||||| |||||||||||  ||| |||||   ||| |||||||||| |||| || ||| |      
T  34670485 tcacatttataagcaaaaaatgac-ttttaaatacattgaataattaatgtatccgatcacatttatgtattagatacattaatgattggatgtacctaa 34670387  T
Q  315 --agttgttttttgtttataaatgtgaccg 342  Q
      |||||||||||| |||||||||||||||    
T  34670386 aaagttgttttttgcttataaatgtgaccg 34670357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 23097511 - 23097595
Alignment:
Q  219 acatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||||| |||| ||||||||||| ||| |||||| || ||||||||||   ||| |||||| |||||||||||||||||||    
T  23097511 acatttataagcaaaa-atgactttttaggtacattgaacaattaatgtatcccatcacatttataagttaaatacattaattatt 23097595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 3094468 - 3094417
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgta 268  Q
    ||||||||||||||||||||| |||||| | ||  |||||||||||||||||    
T  3094468 tcacatttataagtaaaaaataacttttaaggttcattgaataactaatgta 3094417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 2635726 - 2635678
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||||||  | ||||||| || ||||||||||||||||||    
T  2635726 atttataagtaaaaaacaattttttaaatacattgaataactaatgtat 2635678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 15996214 - 15996162
Alignment:
Q  252 attgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||| ||||||||||   ||||||||||||| | ||||||||||||||    
T  15996214 attgaataattaatgtatccaatcacgtttataggtcagatacattaattatt 15996162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 45444725 - 45444781
Alignment:
Q  217 tcacatttataagtaaaaaatga-ctttttaagtatattgaataactaatgtatccg 272  Q
    ||||||||||||| ||||||  | |||||||||| ||||||||||||||||| ||||    
T  45444725 tcacatttataagcaaaaaaacaactttttaagtttattgaataactaatgtttccg 45444781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 43445163 - 43445068
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatac 312  Q
    |||||||| |||| ||||||||| |||||| ||| ||||||||| |||||||||||| ||| ||||| ||||| ||||||||||||||||||||||    
T  43445163 tcacatttgtaagcaaaaaatgattttttatgtacattgaataattaatgtatccggtcacatttatgggttagatacattaattattgaatatac 43445068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 41517497 - 41517368
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||  ||| ||||| ||||| ||||||||||| ||| || ||| |      
T  41517497 tcacatttataagcaaaaaataactttttaagtacattgaataattaatgtatccgatcacatttatgggttagatacattaattcttggatgtacctaa 41517398  T
Q  315 --agttgttttttgtttataaatgtgaccg 342  Q
      ||||| |||||| |||||||||||||||    
T  41517397 aaagttggtttttgcttataaatgtgaccg 41517368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 27279494 - 27279580
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattat 303  Q
    ||||||||||||| ||||||| | |||||| ||  |||||||||||||||||||||  ||   |||||||| | |||||||||||||    
T  27279494 tcacatttataagcaaaaaataattttttaggttcattgaataactaatgtatccgatcataattataggtcagatacattaattat 27279580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 41221758 - 41221706
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccgg 273  Q
    ||||||||||||||||| | |||||| ||  ||||||||||||||||||||||    
T  41221758 atttataagtaaaaaataaatttttaggttcattgaataactaatgtatccgg 41221706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 33956328 - 33956387
Alignment:
Q  252 attgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 311  Q
    ||||||||| |||||||||||| ||  |||||| |||| |||||||||||||| ||||||    
T  33956328 attgaataattaatgtatccggtcatatttataagttagatacattaattattcaatata 33956387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 29168633 - 29168580
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||| ||||||||| || ||| ||||| |||||||||    
T  29168633 tcacatttataagcaaaaaataactttttaaatacattaaataattaatgtatc 29168580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 33956419 - 33956366
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||| | ||||||  |||||||||||| |||||||||    
T  33956419 tcacatttataagaaaaaaataaatttttagatatattgaataattaatgtatc 33956366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 472419 - 472471
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||  |||| || |||||||| || |||||||||||||||||||    
T  472419 tcacatttataaacaaaatataactttttaggtttattgaataactaatgtat 472471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 29168507 - 29168636
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta- 315  Q
    ||||| ||||||||||||||  |||||||| ||  |  |||||||||||  ||| || ||| |||||| || | |||||||||||||| ||| || |||     
T  29168507 tcacagttataagtaaaaaacaactttttaggttcaacgaataactaatacatctggtcacatttataagtaagatacattaattatttaatgtatttaa 29168606  T
Q  316 ---gttgttttttgtttataaatgtgaccg 342  Q
       ||| ||||||| |||||||||||||||    
T  29168607 aaagttattttttgcttataaatgtgaccg 29168636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 9910628 - 9910535
Alignment:
Q  217 tcacatttataagtaaaaaa-tgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatat 310  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||| |||||    
T  9910628 tcacatttataagtaaaaaaatgattttttaggtatattgaataattaatgtatccggtcac-tttataggttagatacattaattattcaatat 9910535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 26296342 - 26296255
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||||||||||||||||| ||||||| || ||||||||| ||| |||| | | ||| ||||||| ||||||||||||||||||    
T  26296342 tcacatttataagtaaaaaatgattttttaaatacattgaataattaacgtatacagtcacatttatagattaaatacattaattatt 26296255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 862833 - 862916
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||| ||||| |||||||||| ||| |||||||||||  ||||||| | ||| ||||||||||| ||||||||||||||    
T  862833 atttataagcaaaaattgactttttaggtacattgaataactggtgtatccagtcacatttataggttagatacattaattatt 862916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 16260756 - 16260669
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||||||| ||||||| | |||||| ||||||||||||| |||||||| | | ||| ||||||||||| | ||||||||||||    
T  16260756 tcacatttataagaaaaaaattattttttacgtatattgaataattaatgtattcagtcacatttataggttagagacattaattatt 16260669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 24252896 - 24252961
Alignment:
Q  221 atttataagtaaaa-aatgactttttaagtatattgaataactaatgtatccggccacgtttatag 285  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||| |||||||    
T  24252896 atttataagtaaaaaaatgactttttaagtatattgaataattaatgtattcggtcacatttatag 24252961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 31159086 - 31159182
Alignment:
Q  219 acatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta 315  Q
    |||||||||||||||||||   |||||| ||  ||||||||| |||||||| ||| ||| |||||| |||| |||||||| ||||| ||||||||||    
T  31159086 acatttataagtaaaaaatacatttttatgttcattgaataattaatgtattcggtcacatttatatgttagatacattagttattcaatatactta 31159182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 5069947 - 5070029
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaa 299  Q
    ||||||||||||| ||||||  ||||||||  || ||||||||| |||||||||||||||  || |||||||| |||||||||    
T  5069947 tcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatccggccatattaataggttagatacattaa 5070029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 31159186 - 31159157
Alignment:
Q  241 tttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||||||||||||||||||||    
T  31159186 tttttaagtatattgaataactaatgtatc 31159157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 3846438 - 3846490
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||| ||||||| | |||||||||  ||||||||| ||||||||    
T  3846438 tcacatttataagcaaaaaataattttttaagttcattgaataaataatgtat 3846490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 5827 - 5915
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 305  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| ||  || |||||||| ||||||| |||||||    
T  5827 tcacatttataagcaaaaaatgactttttaggtacattgaataactaatgtatccggtcatcttcataggttagatacattgattattg 5915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 6590916 - 6590790
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||| ||||||| |||||||| ||| ||||||||| |||||||||||| ||  ||||| ||||| ||||||| ||||||| || ||| |      
T  6590916 tcacatttataagcaaaaaattactttttaggtacattgaataattaatgtatccggtcatatttatgggttagatacattgattattggatgtacctaa 6590817  T
Q  315 --agttgttttttgtttataaatgtga 339  Q
      |||||||||||| ||||||||||||    
T  6590816 gaagttgttttttgcttataaatgtga 6590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 14113342 - 14113258
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 305  Q
    |||| |||||||||||||||||||||  || ||||||||| |||||||| ||| ||| ||||| ||||| |||||||||||||||    
T  14113342 atttctaagtaaaaaatgactttttagatacattgaataattaatgtatacggtcacatttatgggttagatacattaattattg 14113258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 6649202 - 6649118
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 305  Q
    ||||||||| |||||||||||||||| ||| ||||||||| |||||||||||| ||  || || ||||| ||||||| |||||||    
T  6649202 atttataagcaaaaaatgactttttaggtacattgaataattaatgtatccggtcatattcatgggttagatacattgattattg 6649118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 44329164 - 44329252
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 305  Q
    ||||| ||||||| ||||||||| ||||||| || ||||||||| ||||||||  || ||| ||||| ||||| |||||||||||||||    
T  44329164 tcacaattataagcaaaaaatgattttttaaatacattgaataattaatgtatttggtcacatttatgggttagatacattaattattg 44329252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 30542473 - 30542596
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----ag 316  Q
    |||||||| |||||||||| |||||||||||||||||||| |||| |||  ||  || |||| |||||||||| |||||||||| ||| |||||    |     
T  30542473 atttataactaaaaaatga-tttttaagtatattgaataattaatatatttggttacatttaaaggttaaatatattaattattcaatgtacttaaaaaa 30542571  T
Q  317 ttgttttttgtttataaatgtgacc 341  Q
    ||||||||| ||||||||| |||||    
T  30542572 ttgttttttatttataaatatgacc 30542596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 30358713 - 30358623
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaa----atacattaattatt 304  Q
    ||||||||||||| ||||||  |||||||| ||||||||||||| |||||||||||| ||| ||||||| ||||    ||||||||||||||    
T  30358713 tcacatttataag-aaaaaacaactttttaggtatattgaataaataatgtatccggtcacatttatagattaattagatacattaattatt 30358623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 1784096 - 1784183
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||||||  ||||||||| ||||||  || ||||||||  |||||||||||| ||  ||||| ||||| ||||||||||||||    
T  1784096 tcacatttataaacaaaaaatgattttttagatacattgaatatttaatgtatccggtcatatttatgggttagatacattaattatt 1784183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 24185648 - 24185578
Alignment:
Q  234 aaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    |||||| |||||| ||| ||||||||| |||||||||| | ||| ||||||||||| ||| ||||||||||    
T  24185648 aaatgattttttaggtacattgaataattaatgtatccagtcacatttataggttagatatattaattatt 24185578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 2602060 - 2602112
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  2602060 tcacatttataagtaaaaaataattttttaagtttattaaataattaatgtat 2602112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 6616643 - 6616590
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||||| |||||| ||| || |||||| |||||||||    
T  6616643 tcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatc 6616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 27988086 - 27988139
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||  |||||||||||  ||||||||| |||||||||    
T  27988086 tcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 27988139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 28045388 - 28045441
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||  |||||||||||  ||||||||| |||||||||    
T  28045388 tcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 28045441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 30046438 - 30046346
Alignment:
Q  219 acatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 311  Q
    ||||||||||| ||||||| || |||||  || ||||||||| |||||||||||||||| ||||||||||| ||||||||| |||| ||||||    
T  30046438 acatttataagcaaaaaatcacattttagatacattgaataattaatgtatccggccacatttataggttagatacattaactattcaatata 30046346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 14509954 - 14509856
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactta 315  Q
    |||||||||||| |||||||| | ||||||  |||||||||||| ||||||||||   ||  |||||  ||||||||||||||||||||||| ||||||    
T  14509954 tcacatttataaataaaaaataattttttagatatattgaataattaatgtatccaatcatatttatgagttaaatacattaattattgaatgtactta 14509856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 28499789 - 28499883
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatata 311  Q
    ||||||||||||| ||||||| | ||||||  |  |||||||||||||||||||||| ||   |||||| |||||||||||||||||| ||||||    
T  28499789 tcacatttataagcaaaaaataattttttagattcattgaataactaatgtatccggtcataattatagattaaatacattaattattcaatata 28499883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 8355556 - 8355643
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattatt 304  Q
    ||||||||||||||||||| |||  |||||| |||||| ||||| |||||||||||  ||| |||||| |||  ||||||||||||||    
T  8355556 tcacatttataagtaaaaattgatattttaaatatattaaataattaatgtatccgatcacatttatatgttggatacattaattatt 8355643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 14751148 - 14751261
Alignment:
Q  233 aaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----agttgttttttgtt 328  Q
    |||||||||||||| ||  ||||||||| |||||||||| |  || ||||||||||| |||||| || |||| ||| ||| |    |||||||||||| |    
T  14751148 aaaatgactttttaggtgcattgaataattaatgtatccagttacatttataggttagatacatcaactattcaatgtacctaaaaagttgttttttgct 14751247  T
Q  329 tataaatgtgaccg 342  Q
    ||||||||||||||    
T  14751248 tataaatgtgaccg 14751261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 11089426 - 11089345
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacatta 298  Q
    ||||||||||||||||||||| | |||||||||  || |||||| |||| | ||||| ||| |||||| |||| ||||||||    
T  11089426 tcacatttataagtaaaaaataattttttaagttcatcgaataattaatatttccggtcacatttatatgttagatacatta 11089345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 18200668 - 18200721
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||| | | ||||||||| ||||||||||||||||||||    
T  18200668 tcacatttataagcaaaaattaattttttaagtttattgaataactaatgtatc 18200721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 8568009 - 8567921
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattg 305  Q
    ||||||||||||  ||||||||| ||||||| || ||||||||| |||||||||  | ||| |||||  |||  |||||||||||||||    
T  8568009 tcacatttataaacaaaaaatgattttttaaatacattgaataattaatgtatcttgtcacatttatgagttggatacattaattattg 8567921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 19522644 - 19522560
Alignment:
Q  224 tataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaat 308  Q
    ||||| ||||||||||||||||| ||| ||| ||||| |||| |||  |  ||| ||||| ||||| ||||||||||||||||||    
T  19522644 tataaataaaaaatgactttttaggtacattaaataattaatatatttgatcacatttatgggttagatacattaattattgaat 19522560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 28499914 - 28499863
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||| ||||||| ||||||||  |||||||||||| ||||||||    
T  28499914 tcacatttataag-aaaaaataactttttagatatattgaataattaatgtat 28499863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 35463964 - 35464016
Alignment:
Q  221 atttataagtaaaaaatgactttttaagtatattgaataactaatgtatccgg 273  Q
    ||||||||| ||||||| | |||||| ||  ||||||||||||||||||||||    
T  35463964 atttataagcaaaaaataattttttaggttcattgaataactaatgtatccgg 35464016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 43221694 - 43221642
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||| ||||||| |||||||| || ||||||| || ||||||||    
T  43221694 tcacatttataagcaaaaaataactttttaggtttattgaaaaattaatgtat 43221642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 344
Target Start/End: Original strand, 16867625 - 16867756
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||||||||| || ||| ||  ||||| ||||| |||||| |||||||| || ||| |      
T  16867625 tcacatttataagcaaaaaacaactttttaggtacattgaataactaatgcattcggtcatatttatgggttagatacatcaattattggatgtacctaa 16867724  T
Q  315 --agttgttttttgtttataaatgtgaccgaa 344  Q
      |||||||||||| |||||||||||| ||||    
T  16867725 aaagttgttttttgcttataaatgtgatcgaa 16867756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 29212850 - 29212985
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||||||||||    ||||||  ||||||||||||  ||||||||| | ||| ||||||||| | |||||||||||||| ||| ||| |      
T  29212850 tcacatttataagtaaaaaacatttttttagatatattgaataatcaatgtatccagtcacatttataggtcagatacattaattattcaatgtacctaa 29212949  T
Q  315 --agttgttttttgtttataaatgtgaccgaaatga 348  Q
      |   |||||||| |||||||||||||||||||||    
T  29212950 aaaacagttttttgcttataaatgtgaccgaaatga 29212985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 344
Target Start/End: Original strand, 18093785 - 18093916
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt-- 314  Q
    ||||||||||||  ||||||  | ||||||| || ||||||||| |||||||||  | ||| ||||||||| | |||||||||||||| |||| || |      
T  18093785 tcacatttataaacaaaaaacaaatttttaaatacattgaataattaatgtatcttgtcacatttataggtcagatacattaattattcaataaacctaa 18093884  T
Q  315 --agttgttttttgtttataaatgtgaccgaa 344  Q
      | |||||| ||| |||||||||||||||||    
T  18093885 aaacttgtttattgcttataaatgtgaccgaa 18093916  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 10937919 - 10938028
Alignment:
Q  231 aaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaatacattaattattgaatatactt----agttgttttttg 326  Q
    ||||||||| |||| || |||||||||||| |||| |||| || ||| ||||||| ||| ||| ||||||||||| ||||||||    |||||||||||     
T  10937919 aaaaaatga-ttttcaaatatattgaataattaatatatcgggtcacatttatagattagatatattaattattggatatacttaaaaagttgttttttt 10938017  T
Q  327 tttataaatgt 337  Q
     ||||||||||    
T  10938018 attataaatgt 10938028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 30122088 - 30122035
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||| | |||||| ||||||||||||| |||||||||    
T  30122088 tcacatttataagcaaaaaataattttttaggtatattgaataattaatgtatc 30122035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 25109039 - 25108987
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtat 269  Q
    ||||||||||||||||||||| | |||||| ||  ||||||||||||||||||    
T  25109039 tcacatttataagtaaaaaataattttttatgttcattgaataactaatgtat 25108987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 27696621 - 27696698
Alignment:
Q  218 cacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatccggccacgtttataggttaaataca 295  Q
    ||||||||||| |||||||| ||||||||| | |||| ||||  |||||||||||  ||| |||||| |||| |||||    
T  27696621 cacatttataaataaaaaataactttttaaatttattaaatatttaatgtatccgatcacatttataagttagataca 27696698  T

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Target: scaffold0470 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 5929 - 5876
Alignment:
Q  217 tcacatttataagtaaaaaatgactttttaagtatattgaataactaatgtatc 270  Q
    ||||||||||||| ||||||||| |||||| ||| || |||||| |||||||||    
T  5929 tcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatc 5876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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