View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7793_low_10 (Length: 338)
Name: NF7793_low_10
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_low_10 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 39163008 - 39163313
Alignment:
| Q |
24 |
atggaattgtggcaacatataacctgttgatttggtatgacaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39163008 |
atggaattgtggcaacatataacctgttgatttggtatgacaggaacaacatcaaagaggggcagctaatggcattgcaatgactactatgtcagcattc |
39163107 |
T |
|
| Q |
124 |
aaaacaataggtcctgctggaggcggtgcattgtgagtttccctttgatttattttgcttctctgacctatgagccattgttaacaccttagaattgatt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39163108 |
aaaacaataggtcctgctggaggcggtgcattgtgagtttccctttgatttattttgtttctctgacctatgagccattgttaacaccttagaattgatt |
39163207 |
T |
|
| Q |
224 |
gcctctatagggaattcatattgtaaacgatccttgcttaaagaaagtgcatgtgtacatgttttatacataactgtcatatagataaataaatctcaat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39163208 |
gcctctatagggaattcatattgtaaacgatccttgcttaaagaaagtgcatgtgtacatgttttatacataactgtcatatagataaataaatctcaat |
39163307 |
T |
|
| Q |
324 |
tcattt |
329 |
Q |
| |
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|||||| |
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| T |
39163308 |
tcattt |
39163313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 2609534 - 2609632
Alignment:
| Q |
63 |
acaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagt |
161 |
Q |
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|||||| |||| |||||||||||||||||| |||||| | |||||| |||||| |||||||||||| ||||| |||||||| |||||| ||||||| |
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| T |
2609534 |
acaggagcaacgtcaaagaggggcagctaacggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagt |
2609632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 2623643 - 2623754
Alignment:
| Q |
63 |
acaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagtt |
162 |
Q |
| |
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|||||| |||||||||||||| | ||| |||||| || || ||| |||||||||||| ||| ||| ||||| ||||||||||| ||| ||||||| |
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| T |
2623643 |
acaggatcaacatcaaagaggtgtagcaaatggcctttgcataactgctatgtcagcatgcaaggtaattggtccagctggaggcggcgcaatgtgagta |
2623742 |
T |
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| Q |
163 |
tccctttgattt |
174 |
Q |
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|||||||||||| |
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| T |
2623743 |
tccctttgattt |
2623754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 26368026 - 26367915
Alignment:
| Q |
65 |
aggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagtttc |
164 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||||||| ||||| |||||||| |||||| ||||||| | |
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| T |
26368026 |
aggaacaacatcaaagaggggcagctaatggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagtgta |
26367927 |
T |
|
| Q |
165 |
cctttgatttat |
176 |
Q |
| |
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|| ||||||||| |
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| T |
26367926 |
ccattgatttat |
26367915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 16518250 - 16518152
Alignment:
| Q |
63 |
acaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagt |
161 |
Q |
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|||||||||||| ||||||||||| |||||||||||| | ||||| ||||||| ||||||| | || || ||||||| ||| ||| || ||||||| |
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| T |
16518250 |
acaggaacaacaccaaagaggggctgctaatggcatttctatgacagctatgtctctattcaaagcgattggacctgctgcaggtggtacaatgtgagt |
16518152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 16526790 - 16526757
Alignment:
| Q |
63 |
acaggaacaacatcaaagaggggcagctaatggc |
96 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
16526790 |
acaggaacaacaccaaagaggggcagctaatggc |
16526757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 16568380 - 16568348
Alignment:
| Q |
63 |
acaggaacaacatcaaagaggggcagctaatgg |
95 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
16568380 |
acaggaacaacatcaaagaggagcagctaatgg |
16568348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 755 - 787
Alignment:
| Q |
63 |
acaggaacaacatcaaagaggggcagctaatgg |
95 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
755 |
acaggaacaacatcaaagaggagcagctaatgg |
787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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