View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7793_low_11 (Length: 323)
Name: NF7793_low_11
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 3613674 - 3613969
Alignment:
| Q |
12 |
atgaatacagtatgcaacaacttgctgcgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatgtggtaggttctggtat |
111 |
Q |
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| T |
3613674 |
atgaatacagtatgcaacaacttgctgtgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatggggtaggttctggtat |
3613773 |
T |
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| Q |
112 |
tatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaagagaatgttagggcttgtttagcttggaagaaagag |
211 |
Q |
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| T |
3613774 |
tatgcctcatccaacttcaagaaccttgaaagagtattgttggacggattcttttgcaaatcaagagaatgttagggcttgtttagcttgggagaaagag |
3613873 |
T |
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| Q |
212 |
acatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataat |
307 |
Q |
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| T |
3613874 |
acatgttctggaaaaccgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataat |
3613969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 14757497 - 14757791
Alignment:
| Q |
12 |
atgaatacagtatgcaacaacttgctgcgctgaatcttgttccatgcgcccgctcaaaattggcagcatggacaagagcctatgtggtaggttctggtat |
111 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||| |
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| T |
14757497 |
atgaatacagtatgcaacaacttgctgcgttgaatcttgttccatgcgccggctcaaaattggcagcatggacaagagcttatggggtaggttgtggtat |
14757596 |
T |
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| Q |
112 |
tatgcctcatccaacttcaagaaccttgaaagaatattactggacggattcgtttgcaaatcaagagaatgttagggcttgtttagcttggaagaaagag |
211 |
Q |
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||||||||||||||||||||||| ||||||| |||| |||||| ||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| |
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| T |
14757597 |
tatgcctcatccaacttcaagaatgatgaaagagtattgctggactgattcttttgcgaagcaagagaatgttagggcttgtttagcttgggagaaggag |
14757696 |
T |
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| Q |
212 |
acatgttctggaaaactgatgaacgtgatttgcttgaatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataa |
306 |
Q |
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| T |
14757697 |
atgtgttccggaaagccgacgaacatgatttgcttgaatattattggtctgtttgggctatttcacctcaataaggatcacacattctgtaataa |
14757791 |
T |
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