View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7793_low_12 (Length: 322)
Name: NF7793_low_12
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 45141559 - 45141842
Alignment:
| Q |
17 |
gagatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141559 |
gagatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtc |
45141658 |
T |
|
| Q |
117 |
tagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141659 |
tagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatg |
45141758 |
T |
|
| Q |
217 |
gtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45141759 |
gtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggaaatcgtggccatgattatgtt |
45141842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 45152204 - 45152465
Alignment:
| Q |
19 |
gatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggta------ |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| ||||| || |
|
|
| T |
45152204 |
gatgaaaaacaagttgaggaaaccgtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgcta |
45152303 |
T |
|
| Q |
113 |
tgtctagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgttt |
212 |
Q |
| |
|
|||||| |||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |
|
|
| T |
45152304 |
tgtctatcagcatactaa----tgatgtaaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgt |
45152399 |
T |
|
| Q |
213 |
catggtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctgg |
278 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || || ||||| |||| || ||||||||| |
|
|
| T |
45152400 |
tatggtggaaagaaaaattcgtggatccataatttgcacggctagtgtggctggctttgttgctgg |
45152465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 38256127 - 38256271
Alignment:
| Q |
121 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
220 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | ||||||| |
|
|
| T |
38256127 |
agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg |
38256226 |
T |
|
| Q |
221 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctg |
265 |
Q |
| |
|
| |||||||| || ||||| |||||||| || ||||||||||||| |
|
|
| T |
38256227 |
aaagaaaaatacgaggatcaataatttgcacagccagtgtagctg |
38256271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University