View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7793_low_3 (Length: 648)
Name: NF7793_low_3
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 70 - 638
Target Start/End: Complemental strand, 9459097 - 9458528
Alignment:
| Q |
70 |
ccttagataatcccgtttggattgttggaccattcaatgacgaaacacgnnnnnnnctcatatcaatatcactaagagga---ttctaatcaaggaaatt |
166 |
Q |
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| T |
9459097 |
ccttagataatcccgtttggattattggaccattcaatgacgaaacacgaaaaaa-ctcatatcaatatcactaagaggaggattctaatcaaggaaatt |
9458999 |
T |
|
| Q |
167 |
actgaaggtccccatgtattgcttaaaattcaatgaaaacatccatcaaaagctaaaatccgatagcacttgtaggnnnnnnnnntacccatcggaaatt |
266 |
Q |
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| T |
9458998 |
actgaaggtccccatatattgcttaaaattcaatgaaaacatccatcaaaagctaaaatccgatagcacttgtaggaaaaaaaa-tacccatcggaaatt |
9458900 |
T |
|
| Q |
267 |
acattcctataggtttagcaattcgggggtctgtttagctataccttctaataagacacttggccccacatgattatgcttccccttggcccaaaatggt |
366 |
Q |
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| T |
9458899 |
acattccgataggtttagcaagccaggggtctgtttagctacaccttctaataagacactcagccccacatgattatgcttacccttggcccaaaatggt |
9458800 |
T |
|
| Q |
367 |
tctttctttctttc--------cacacatgcaaatttttcccaaa-----------atgtgcaatgtgttctttttatttcttgtggtgatataatttaa |
447 |
Q |
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| T |
9458799 |
tctttctttctttctttctttccacacatg-aaatttttgaaagagattcggtgcaatgtgcaatgtgttctttttatttcttgtggtgatataatttaa |
9458701 |
T |
|
| Q |
448 |
actgcacgatcaactaaattaaacggttgaaatttagtgtatgtattttaacttacacctaatatcaatggattctaactcttatgttatttattattaa |
547 |
Q |
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| T |
9458700 |
accgcacgatcaactaaattaaacggttgaaatttagtgtatgtattttgacttacacctaatatcaatgaa----------tat--------ttattaa |
9458619 |
T |
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| Q |
548 |
attatgatgatactattgatatatctctatatctgtttacatgtagagagaatgtattgcaaaagcattaagtccaacggtttcttctcac |
638 |
Q |
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| T |
9458618 |
attatgatgatacaattgatatatctctatatctgtttatatgtagagagaatatattgcaaaagcattaagtccaacgatttcttgtcac |
9458528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 10233265 - 10233224
Alignment:
| Q |
408 |
gcaatgtgttctttttatttcttgtggtgatataatttaaac |
449 |
Q |
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| T |
10233265 |
gcaatgtgttctttttatttatggtggtgatataatttaaac |
10233224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 527
Target Start/End: Complemental strand, 31552093 - 31551991
Alignment:
| Q |
425 |
tttcttgtggtgatataatttaaactgcacgatcaactaaattaaacggttgaaatttagtgtatgtattttaacttacacctaatatcaatggattcta |
524 |
Q |
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| T |
31552093 |
tttcttatgttgatattatttaaaccatacgatcaaataaattaaacagttgagatttgatgtaagtttttttacttacacttggtatcaatggatccta |
31551994 |
T |
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| Q |
525 |
act |
527 |
Q |
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| T |
31551993 |
act |
31551991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 35539160 - 35539206
Alignment:
| Q |
186 |
tgcttaaaattcaatgaaaacatccatcaaaagctaaaatccgatag |
232 |
Q |
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| T |
35539160 |
tgcttaaaattcaacgaaaacgtccatcagaagctagaatccgatag |
35539206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 507
Target Start/End: Complemental strand, 3028758 - 3028687
Alignment:
| Q |
436 |
gatataatttaaactgcacgatcaactaaattaaacggttgaaatttagtgtatgtattttaacttacacct |
507 |
Q |
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| T |
3028758 |
gatataatttaaactatacgatcaattaaatttaacggttaagatttggtgtaactcttttaacttacacct |
3028687 |
T |
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