View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7793_low_4 (Length: 615)

Name: NF7793_low_4
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7793_low_4
NF7793_low_4
[»] chr8 (9 HSPs)
chr8 (349-435)||(6652128-6652214)
chr8 (349-435)||(6732528-6732614)
chr8 (523-594)||(6652264-6652333)
chr8 (523-594)||(6566811-6566880)
chr8 (523-594)||(6732664-6732733)
chr8 (135-222)||(6651905-6651992)
chr8 (135-222)||(6732305-6732392)
chr8 (240-283)||(6652025-6652068)
chr8 (240-283)||(6732425-6732468)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 6652128 - 6652214
Alignment:
Q  349 ggggaaaggtaaccaaaaagaagagcgaatagagaaaagctgccaaacataacaaataacagggagataatcaatcaaacagaagaa 435  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  6652128 ggggaaaggcaaccaaaaagaagagcgaatagagaaaagcaaccaaacataacaattaacagggagataatcaatcaaacagaagaa 6652214  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 6732528 - 6732614
Alignment:
Q  349 ggggaaaggtaaccaaaaagaagagcgaatagagaaaagctgccaaacataacaaataacagggagataatcaatcaaacagaagaa 435  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||    
T  6732528 ggggaaaggcaaccaaaaagaagagcgaatagagaaaagcaaccaaacataacaattaacagtgagataatcaatcaaacagaagaa 6732614  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 523 - 594
Target Start/End: Original strand, 6652264 - 6652333
Alignment:
Q  523 ctgtggaagctttggttacagtatatgccgtgctgtttctcaacttgaaatggggagcttggccgttgcaag 594  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  6652264 ctgtggaagctttggttacagtat--gccgtgctgtttctcaacttgaaatggggagcttggccgttgcaag 6652333  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 594
Target Start/End: Original strand, 6566811 - 6566880
Alignment:
Q  523 ctgtggaagctttggttacagtatatgccgtgctgtttctcaacttgaaatggggagcttggccgttgcaag 594  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||    
T  6566811 ctgtggaagctttggttacagtat--gccgtgctgtttctcaacttgaaatggggagcttggcagttgcaag 6566880  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 594
Target Start/End: Original strand, 6732664 - 6732733
Alignment:
Q  523 ctgtggaagctttggttacagtatatgccgtgctgtttctcaacttgaaatggggagcttggccgttgcaag 594  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||    
T  6732664 ctgtggaagctttggttacagtat--gccgtgctgtttctcaacttgaaatggggagcttggctgttgcaag 6732733  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 6651905 - 6651992
Alignment:
Q  135 tcaaaccaactaatattatacccaactaagaagagcatccaataaatgagcaacaattaaagaagaagcaacaaccaaagagatgaac 222  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||||| ||| || ||||||||||||  ||||||||||||||||    
T  6651905 tcaaaccaactagtattgtaaccaactaagaagagcatccaataaatgagaaacgatcaaagaagaagcacaaaccaaagagatgaac 6651992  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 6732305 - 6732392
Alignment:
Q  135 tcaaaccaactaatattatacccaactaagaagagcatccaataaatgagcaacaattaaagaagaagcaacaaccaaagagatgaac 222  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||||| ||| || ||||||||||||  ||||||||||||||||    
T  6732305 tcaaaccaactagtattgtaaccaactaagaagagcatccaataaatgagaaacgatcaaagaagaagcacaaaccaaagagatgaac 6732392  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 6652025 - 6652068
Alignment:
Q  240 aaaccaaaccaaatcagaccaagggaaaccaaaaatataaacta 283  Q
    ||| ||||||||||||| |||| |||||||||||||||||||||    
T  6652025 aaatcaaaccaaatcaggccaatggaaaccaaaaatataaacta 6652068  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 6732425 - 6732468
Alignment:
Q  240 aaaccaaaccaaatcagaccaagggaaaccaaaaatataaacta 283  Q
    ||| ||||||||||||| |||| |||||||||||||||||||||    
T  6732425 aaatcaaaccaaatcaggccaatggaaaccaaaaatataaacta 6732468  T

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