View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7793_low_6 (Length: 483)

Name: NF7793_low_6
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7793_low_6
NF7793_low_6
[»] chr5 (3 HSPs)
chr5 (89-468)||(19593849-19594227)
chr5 (197-278)||(17764622-17764703)
chr5 (187-269)||(23980553-23980635)
[»] chr1 (2 HSPs)
chr1 (96-322)||(35142261-35142484)
chr1 (92-274)||(33012466-33012648)
[»] chr4 (4 HSPs)
chr4 (95-324)||(12713896-12714125)
chr4 (364-468)||(12045090-12045194)
chr4 (366-440)||(20383398-20383472)
chr4 (132-278)||(21079512-21079658)
[»] chr8 (1 HSPs)
chr8 (104-237)||(12236998-12237131)
[»] chr3 (1 HSPs)
chr3 (364-448)||(8046340-8046424)
[»] chr7 (1 HSPs)
chr7 (223-276)||(3410065-3410118)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 89 - 468
Target Start/End: Original strand, 19593849 - 19594227
Alignment:
Q  89 cagcatccgcctacggaaacctataccgaggtagaacacaactgtccgaataaaactccgcctgtaaatcaggaggtaaaactaacaaccacacatcccc 188  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19593849 cagcaaccgcctacggaaacctataccgaggtagaacacaacggtccgaataaaactccgcctgtaaatcaggaggtaaaactaacaaccacacatcccc 19593948  T
Q  189 atcaaccgagtgacccatagaagccagcctatcagcacaacaattaccttctccgaaaatataagaggaaataacctgaattccaagagaacatccatta 288  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  19593949 atcaaccgagtgacccatagaagccaacctatcagcacaacaattacctttacggaaaatataagaggaaataacctgaattccaagagaacatccatta 19594048  T
Q  289 tacccaacaattgcgaagcaaaaccggcaccaacgacatattatattcttgaaaactaaaatagcgttggtagagtcactctctaaccatatgttcgtcc 388  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  19594049 tacccaacgactgcgaagcaaaaccggcaccaacgacatattatattcttgaaaactaaaatagcgctagtagagtcactctctaaccatatgttcgtcc 19594148  T
Q  389 acccattatgggcagcatactccatatccagaataaaaccatgcacttcagcagtaaaaatagagcaactacccaaatta 468  Q
    | ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  19594149 a-ccattatgggcagcatactccatatcccgaataaaatcatgcacttcagccgtaaaaatagagcaactacccaaatta 19594227  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 17764703 - 17764622
Alignment:
Q  197 agtgacccatagaagccagcctatcagcacaacaattaccttctccgaaaatataagaggaaataacctgaattccaagaga 278  Q
    |||||||||||| ||||| ||| ||| ||||||| |||||||| | ||| || | |||||||| ||||||||| ||||||||    
T  17764703 agtgacccatagcagccaacctgtcaacacaacagttaccttcacagaagatgtgagaggaaagaacctgaataccaagaga 17764622  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 23980553 - 23980635
Alignment:
Q  187 ccatcaaccgagtgacccatagaagccagcctatcagcacaacaattaccttctccgaaaatataagaggaaataacctgaat 269  Q
    ||||||||||||||||||||| |||||| ||| |||||||||   ||||||||   |||||| | |||||| ||||| |||||    
T  23980553 ccatcaaccgagtgacccataaaagccaacctgtcagcacaagcgttaccttcatagaaaatgtgagaggagataacttgaat 23980635  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 322
Target Start/End: Complemental strand, 35142484 - 35142261
Alignment:
Q  96 cgcctacggaaacctataccgaggtagaacacaactgtccgaataaaactccgcctgtaaatcaggaggtaaaactaacaaccacacatccccatcaacc 195  Q
    |||||| ||||||||||| | ||| | | |||||| |||| |||||||||||||||| || | |||||||||| | | |||||||||  ||| || ||||    
T  35142484 cgcctaaggaaacctataacaaggcataccacaacggtccaaataaaactccgcctgcaagtaaggaggtaaaccga-caaccacaccaccc-atgaacc 35142387  T
Q  196 gagtgacccatagaagccagcctatcagcacaacaattaccttctccgaaaatataagaggaaataacctgaattccaagagaacatccattatacccaa 295  Q
    |||||||||| |  ||| | | |||| ||||||||||||||||| | |||||||| ||||||||||| | ||||||||||||||||  || |||  ||||    
T  35142386 gagtgacccaaattagcaaacttatccgcacaacaattaccttcacggaaaatatgagaggaaataatccgaattccaagagaacaagcaatat-gccaa 35142288  T
Q  296 caattgcgaagcaaaaccggcaccaac 322  Q
    |  || |||||||||||||||||||||    
T  35142287 cggtttcgaagcaaaaccggcaccaac 35142261  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 274
Target Start/End: Complemental strand, 33012648 - 33012466
Alignment:
Q  92 catccgcctacggaaacctataccgaggtagaacacaactgtccgaataaaactccgcctgtaaatcaggaggtaaaactaacaaccacacatccccatc 191  Q
    |||||||||||||||| ||| | ||||| | | || ||| ||||| |||||||||   ||| ||||||| ||| | |||  ||||||| ||  | ||| |    
T  33012648 catccgcctacggaaatctaaatcgaggcataccataacggtccgcataaaactcatgctgcaaatcagaaggcagaaccgacaaccaaaccgcaccaac 33012549  T
Q  192 aaccgagtgacccatagaagccagcctatcagcacaacaattaccttctccgaaaatataagaggaaataacctgaattccaa 274  Q
    ||||||| |||||| || ||||| ||| ||||||||||  || ||||| | |||||| |  ||||||||||||||||| ||||    
T  33012548 aaccgagagacccaaagcagccaacctgtcagcacaacggttcccttcacggaaaatgtgcgaggaaataacctgaataccaa 33012466  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 324
Target Start/End: Complemental strand, 12714125 - 12713896
Alignment:
Q  95 ccgcctacggaaacctataccgaggtagaacacaactgtccgaataaaactccgcctgtaaatcaggaggtaaaactaacaaccacacatccccatcaac 194  Q
    ||||||| ||||||||||| | ||| | | |||||| |||| ||||||||||| |||| || | ||||||||||||  ||||||||||  |||||| |||    
T  12714125 ccgcctaaggaaacctataacaaggcataccacaacggtccaaataaaactcctcctgcaagttaggaggtaaaaccgacaaccacactgccccatgaac 12714026  T
Q  195 cgagtgacccatagaagccagcctatcagcacaacaattaccttctccg-aaaatataagaggaaataacctgaattccaagagaacatccattataccc 293  Q
    ||||||||||| |  | | | | |||| ||||||||||||||||| | | ||||||| | ||||||||| | |||||| |||||||||  || |||  ||    
T  12714025 cgagtgacccaaattaacaaacttatccgcacaacaattaccttcactgaaaaatatgacaggaaataatccgaattcaaagagaacaagcaatat-gcc 12713927  T
Q  294 aacaattgcgaagcaaaaccggcaccaacga 324  Q
    |||  || | |||||||||||||||||||||    
T  12713926 aactgtttcaaagcaaaaccggcaccaacga 12713896  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 468
Target Start/End: Complemental strand, 12045194 - 12045090
Alignment:
Q  364 tcactctctaaccatatgttcgtccacccattatgggcagcatactccatatccagaataaaaccatgcacttcagcagtaaaaatagagcaactaccca 463  Q
    ||||| |||||||||| |||   ||||||||| |||||||||||||||| | ||| |||||||||||| | ||| || ||||||| |||  |||| ||||    
T  12045194 tcactttctaaccataagtttcgccacccattgtgggcagcatactccagagccaaaataaaaccatgaatttctgcggtaaaaagagaagaacttccca 12045095  T
Q  464 aatta 468  Q
    |||||    
T  12045094 aatta 12045090  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 20383472 - 20383398
Alignment:
Q  366 actctctaaccatatgttcgtccacccattatgggcagcatactccatatccagaataaaaccatgcacttcagc 440  Q
    ||||||||||||||||||  |||| || || || || |||||||||| | |||||||||||||||| | ||||||    
T  20383472 actctctaaccatatgtttctccatccgttgtgtgcggcatactccagagccagaataaaaccatgaatttcagc 20383398  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 21079658 - 21079512
Alignment:
Q  132 gtccgaataaaactccgcctgtaaatcaggaggtaaaactaacaaccacacatccccatcaaccgagtgacccatagaagccagcctatcagcacaacaa 231  Q
    ||||||| |||| |||| ||| ||||||| ||||||||   |||||||  |  | |||||||||||||||||| ||||||||| ||| |||||| ||       
T  21079658 gtccgaacaaaaatccggctgaaaatcagaaggtaaaatagacaaccaagctgcaccatcaaccgagtgacccctagaagccaacctgtcagcataagcg 21079559  T
Q  232 ttaccttctccgaaaatataagaggaaataacctgaattccaagaga 278  Q
    ||| |||| | |||||  | |||||| ||||||| ||| ||||||||    
T  21079558 ttagcttcacggaaaacgtgagaggatataacctaaataccaagaga 21079512  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 12236998 - 12237131
Alignment:
Q  104 gaaacctataccgaggtagaacacaactgtccgaataaaactccgcctgtaaatcaggaggtaaaactaacaaccacacatccccatcaaccgagtgacc 203  Q
    |||||||||| ||||| | | |||||| ||| |||||||| | ||| || || |||||||||| |||  ||||| ||||  |||||| |  |||||||||    
T  12236998 gaaacctataacgaggcataccacaacagtctgaataaaaattcgcttgcaagtcaggaggtagaaccgacaactacactgccccatgagtcgagtgacc 12237097  T
Q  204 catagaagccagcctatcagcacaacaattacct 237  Q
    ||||  ||||| | ||||||||||||||||||||    
T  12237098 catattagccaacttatcagcacaacaattacct 12237131  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 448
Target Start/End: Original strand, 8046340 - 8046424
Alignment:
Q  364 tcactctctaaccatatgttcgtccacccattatgggcagcatactccatatccagaataaaaccatgcacttcagcagtaaaaa 448  Q
    ||||| |||||||||| |||  |||||| ||| |||||||||||||||| | ||| |||| ||||||| | ||| ||||||||||    
T  8046340 tcactttctaaccataagtttttccaccaattgtgggcagcatactccagagccaaaatagaaccatgaatttccgcagtaaaaa 8046424  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 3410118 - 3410065
Alignment:
Q  223 gcacaacaattaccttctccgaaaatataagaggaaataacctgaattccaaga 276  Q
    |||||||| |||||||| | |||||| | ||| |||||||||||||||||||||    
T  3410118 gcacaacagttaccttcacggaaaatgtgagaagaaataacctgaattccaaga 3410065  T

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