View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7793_low_8 (Length: 345)
Name: NF7793_low_8
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 45450632 - 45450949
Alignment:
| Q |
16 |
cctatagctgtagcaacataataaagttgtagaggatccaatttcatagatatactaatgaaccaatatggcaatggtgaaatcaatgcaggagggatag |
115 |
Q |
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| T |
45450632 |
cctatagctgtagcaacataataaagttgtagaggatccaatttcatagatatactaatgaaccaatatggcaatggtgaaatcgatgcaggagggatag |
45450731 |
T |
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| Q |
116 |
aatgtgagaatctgagcaaggaaacatgctcatttgctgtttcatctagcagtaaaaggtgtgtccttgagaaacatgtgaaaagaacaggggaggaagc |
215 |
Q |
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| T |
45450732 |
aatgtgagaatctgagcaaggaaacatgctcatttgctgtttcatctagcagtaaaaggtgtgtccttgagaaacatgtgaaaagaacaggggaggaagc |
45450831 |
T |
|
| Q |
216 |
atacacatgcaaaacatcagagattgaagctgataaactaaaggatcacattgaaagcgaccaatgcatcaaagcttgtgatttagacagaaaatcactt |
315 |
Q |
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| T |
45450832 |
atacacatgcaaaacattagagattgaagctgataaactaaaggatcacatcgaaagcgaccaatgcatcaaagcttgtgatttagacagaaaatcactt |
45450931 |
T |
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| Q |
316 |
ggaatttcatcagattct |
333 |
Q |
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| T |
45450932 |
ggaatttcatcagattct |
45450949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 18491574 - 18491343
Alignment:
| Q |
102 |
tgcaggagggatagaatgtgagaatctgagcaaggaaacatgctcatttgctgtttcatctagcagtaaaaggt-gtgtccttgagaaacatgtgaaaag |
200 |
Q |
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| T |
18491574 |
tgcaggaggcatagaatgtgagaatttgaaccaagacacatgcgcatttgcagtgtcatat-gcaggaaaacgttgtgttcttgagaagcatgttaagag |
18491476 |
T |
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| Q |
201 |
aacaggggaggaagcatacacatgcaaaacatcagagattgaagctgataaactaaaggatcacattgaaagcgaccaatgcatcaaagcttgtgattta |
300 |
Q |
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| T |
18491475 |
aaatggtgaagaaaaatatacatgtagaacatcagagattgaagctgataaattaaaggaccatattgaaagtgaccaatgtattaagtcttgtggtttg |
18491376 |
T |
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| Q |
301 |
gacagaaaatcacttggaatttcatcagattct |
333 |
Q |
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| T |
18491375 |
gacagaaaatcctttggaatatcatctgattct |
18491343 |
T |
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