View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7793_low_9 (Length: 344)
Name: NF7793_low_9
Description: NF7793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7793_low_9 |
 | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 21091397 - 21091084
Alignment:
| Q |
12 |
aagaatatcatccagccctgcttaccatactttgcagtgaaataaaacgctggtataagtaaaaaacgagaaattactgccgtggtgatcatttttctag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21091397 |
aagaatatcatccagccctgcttaccatacttcgcagtgaaataaaacgctggtataagtaaaaaacgagaaattactgccgtggtgatcatttttctag |
21091298 |
T |
|
| Q |
112 |
actccatcttcaagattttcacgagtggaatgtatcttgcgataagatcaaacacattaaacgtggcaattaaaacaagagcatacctgaaacaaatgga |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21091297 |
actccatcttcaagattttcacgagcggaatgtatcttgcgataagatcaaacacattaaacgtggcaattaaaacaagagcatacctgaaacaaattga |
21091198 |
T |
|
| Q |
212 |
aatatcgaccatctcttaaatcatcacatacacgcaacatagaacaaaggaagaaaacatgcatatgaacctaccaggtgcctaaactgtgtgatccagt |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21091197 |
aatatcgaccagctcttaaatcatcacatacacacaacatagaacaatggaagaaaaaatgcatatgaacctaccaggtgcctaaactgtgtgatccagt |
21091098 |
T |
|
| Q |
312 |
atcttctgataaga |
325 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
21091097 |
atcttccgataaga |
21091084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 37855873 - 37855691
Alignment:
| Q |
17 |
tatcatccagccctgcttaccatactttgcagtgaaataaaacgctggtataagtaaaaaacgagaaattactgccgtggtgatcatttttctagactcc |
116 |
Q |
| |
|
||||||||| || || | |||||||||||||||||||||||| ||||| | |||||| |||||| | | || ||| |||||||| |||| |||||| |
|
|
| T |
37855873 |
tatcatccaaccttgatcaccatactttgcagtgaaataaaatgctggaacaagtaagaaacgacatagtattgctaccgtgatcatctttcgtgactcc |
37855774 |
T |
|
| Q |
117 |
atcttcaagattttcacgagtggaatgtatcttgcgataagatcaaacacattaaacgtggcaattaaaacaagagcatacct |
199 |
Q |
| |
|
| ||||| | || || |||||| ||||||||| | || ||||| ||||||| || | |||||||| |||||||||||||| |
|
|
| T |
37855773 |
aatttcaaaaattccaagagtgggatgtatcttcctattagatcccacacattgtacattgcaattaacacaagagcatacct |
37855691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 62282 - 62487
Alignment:
| Q |
17 |
tatcatccagccctgcttaccatactttgcagtgaaataaaacgctggtataagtaaaaaacgagaaattactgccgtggtgatcatttttctagactcc |
116 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||||| || |||| |||||||| |||||||| ||||| || ||||||| |||||||||||| |
|
|
| T |
62282 |
tatcatccaaccttgagtaccatactttgcagtgaaataaaatgccggtacaagtaaaactcgagaaataactgctgtagtgatcaactttctagactcc |
62381 |
T |
|
| Q |
117 |
atcttcaagattttcacgagtggaatgtatcttgcgataagatcaaacacattaaacgtggcaattaaaacaagagcatacctgaaacaaatggaaatat |
216 |
Q |
| |
|
| |||||||||||| | ||||||||||||||| |||||||||| | |||||| || | ||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
62382 |
aacttcaagattttgatcagtggaatgtatcttccgataagatcccatacattatacatagcaattaaaacaagagcgtacctgtaataaatggaaatat |
62481 |
T |
|
| Q |
217 |
cgacca |
222 |
Q |
| |
|
| |||| |
|
|
| T |
62482 |
caacca |
62487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 50785 - 50832
Alignment:
| Q |
276 |
atgaacctaccaggtgcctaaactgtgtgatccagtatcttctgataa |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
50785 |
atgaacttaccaggtgcctaaactgtgttttccggtatcttctgataa |
50832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 18098266 - 18098084
Alignment:
| Q |
17 |
tatcatccagccctgcttaccatactttgcagtgaaataaaacgctggtataagtaaaaaacgagaaattactgccgtggtgatcatttttctagactcc |
116 |
Q |
| |
|
||||||||| || || | |||||||||||||||||||||||| ||||| | |||||| |||||| | | || ||| |||||||| |||| |||||| |
|
|
| T |
18098266 |
tatcatccaaccttgatcaccatactttgcagtgaaataaaatgctggaacaagtaagaaacgacatagtattgctaccgtgatcatctttcgtgactcc |
18098167 |
T |
|
| Q |
117 |
atcttcaagattttcacgagtggaatgtatcttgcgataagatcaaacacattaaacgtggcaattaaaacaagagcatacct |
199 |
Q |
| |
|
| ||||| | || || |||||| ||||||||| | || ||||| ||||||| || | |||||||| |||||||||||||| |
|
|
| T |
18098166 |
aatttcaaaaattccaagagtgggatgtatcttcctattagatcccacacattgtacattgcaattaacacaagagcatacct |
18098084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 31524693 - 31524646
Alignment:
| Q |
276 |
atgaacctaccaggtgcctaaactgtgtgatccagtatcttctgataa |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
31524693 |
atgaacttaccaggtgcctaaactgtgttttccggtatcttctgataa |
31524646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 31525062 - 31525026
Alignment:
| Q |
36 |
ccatactttgcagtgaaataaaacgctggtataagta |
72 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
31525062 |
ccatactttgcagcgaaataaaatgctggtataagta |
31525026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University