View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_high_2 (Length: 605)
Name: NF7794_high_2
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 34747894 - 34748482
Alignment:
| Q |
1 |
aggagaacggagaagcgagacgagagcaacaacgggacaatgctctaggattgtaagagatagagacaacacatcttcactcaaaaccttaagaccacgc |
100 |
Q |
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| T |
34747894 |
aggagaacggagaaacgagacgagagcaacatcgggacaatgctctaggatcgtaagagatagagacaacacatcttcactcaaaaccttaagaccacgt |
34747993 |
T |
|
| Q |
101 |
ctgcacctaaaatcttaattggagaatcgggagagttgcaatatgctaaacattcaggatcactaagagacattgacaccatgtctttatccaaaaccac |
200 |
Q |
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| T |
34747994 |
ctgcacctaaaatcttaattggagaatcgggggagtcgcaataggctaaacattcaggatcactaagagacattgacaccatgtctttatccaaaaccac |
34748093 |
T |
|
| Q |
201 |
aaggcaatagatttatgaaccctctcacttatctactgcttaacactcacnnnnnnnatgaaacgtgagacttctaactcacctcaaacttgtcacatca |
300 |
Q |
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| T |
34748094 |
aaggcaatagatttatgaaccctcacacttatatactgcttaacactcactttttttatgaaacgtgagacttctaactcacctcaaacttgtcacaaca |
34748193 |
T |
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| Q |
301 |
tttggtatatggatcatatagtagatagctcgagcatcaatgtataagcattagctttggatatttactatattaagtcttggataaaacttgcctcaaa |
400 |
Q |
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| T |
34748194 |
tttggtatatggatcatatagtagatagctcgagcatcaatgtataagcattagctttgga---ttactatattaagtcttggataaaacttgcctcaaa |
34748290 |
T |
|
| Q |
401 |
tttacaaaggtggcacttccttataaactcttgttgtaattctatatatctcttttgaaaggacatggtcattttccaatatattattacaaggtataaa |
500 |
Q |
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| T |
34748291 |
tttacaaaggtggcacttccttataaactcttgttgaaattctatatatctcttttgaaaggacatggtcattttccaatatattattacaaggtataaa |
34748390 |
T |
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| Q |
501 |
ttgagttgaggtattgtattattttgatgta-----taaatatactgaaacatacataatgaatataattaaacttaaacctatggcatgga |
587 |
Q |
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| T |
34748391 |
ttgagttgaggtattgtattattttgatgtataaattaaatatactgaaacatacatcatgagcataattaaacttaaacctatggcatgga |
34748482 |
T |
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