View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_low_11 (Length: 388)
Name: NF7794_low_11
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 18482952 - 18482827
Alignment:
| Q |
246 |
tatctcaagagttgtcctggtagaggcttctttttcctagacactcatcactacatatcaaaggatacacaaatgttgactgggcagaatgtaaagacac |
345 |
Q |
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| T |
18482952 |
tatctcaagacttgtcctggtagaggcttctttttcctagacactcatcactacatatcaaaggatacacaaatgttgactgggcagaatgtaaagacac |
18482853 |
T |
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| Q |
346 |
taggagatccatttctggccaatgtt |
371 |
Q |
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| T |
18482852 |
taggagatccatttctggccaatgtt |
18482827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 19995902 - 19996262
Alignment:
| Q |
15 |
gattcaggtttacttggttcaaaaccatttttcactcct---gactcttccatcaagttacacaatgatttaacacctccttttcttgatataccatttt |
111 |
Q |
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| T |
19995902 |
gattcaggtttaattggttctaaaccagtttccactccttctgatccttctatcaaacttcacaatgattcagctctccctttttctaatataccagcat |
19996001 |
T |
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| Q |
112 |
atagaaggttgataggtagattactttaccttaacaaaatcagacctaacatcacctatattactcaacaactcaatcaatttctaagtaatcctactca |
211 |
Q |
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| T |
19996002 |
ataaaaggttgattggtagattactttacctcaacacaactagacctgacatcacttacatcactcaacaacttagttaatttctcagcaaccctactca |
19996101 |
T |
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| Q |
212 |
aactcatcacattgcagctatgagagttttgaaatatctcaagagttgtcctggtagaggcttctt-tttcctagacactcatcactacatatcaaagga |
310 |
Q |
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| T |
19996102 |
cactcatcatactgcagttttgagagttctgagatatcttaagagttgtcctggtagaggtttgttctttcccagacattcttcacttcaaattaaatag |
19996201 |
T |
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| Q |
311 |
tacacaaatgttgactgggcagaatgtaaagacactaggagatccatttctggccaatgtt |
371 |
Q |
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| T |
19996202 |
tataccgatgctgactgggcaggatgcaaagatactagaaggtcaatttctggacaatgtt |
19996262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 330
Target Start/End: Original strand, 15758942 - 15759203
Alignment:
| Q |
70 |
tacacaatgatttaacacctccttttcttgatataccattttatagaaggttgataggtagattactttaccttaacaaaatcagacctaacatcaccta |
169 |
Q |
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| T |
15758942 |
tacataatgattcagcaccttcgtttcctgatataccagcctatagaagattgattggtagactactttacctgaataccaccagacctgatattaccta |
15759041 |
T |
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| Q |
170 |
tattactcaacaactcaatcaatttctaagtaatcctactcaaactcatcacattgcagctatgagagttttgaaatatctcaagagttgtcctggtaga |
269 |
Q |
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| T |
15759042 |
catcacttagcaattaagtcaatttctcagtaaccatactcaaacacattacactgcagctatgagggttttgagctatcttaaaggttgtcctggcaaa |
15759141 |
T |
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| Q |
270 |
ggcttctt-tttcctagacactcatcactacatatcaaaggatacacaaatgttgactgggc |
330 |
Q |
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| T |
15759142 |
ggtttattcttcccaagacaatcatcccttcaaatccaaggatacactaatgcagactgggc |
15759203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 35619513 - 35619601
Alignment:
| Q |
165 |
acctatattactcaacaactcaatcaatttctaagtaatcctactcaaactcatcacattgcagctatgagagttttgaaatatctcaa |
253 |
Q |
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| T |
35619513 |
acctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaa |
35619601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 10560533 - 10560424
Alignment:
| Q |
111 |
tatagaaggttgataggtagattactttaccttaacaaaatcagacctaacatcacctatattactcaacaactcaatcaatttctaagtaatcctactc |
210 |
Q |
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||||||||| |||| ||||||||||| ||||| || | | |||||| ||||||||||||| || |||||| | | |||||||||| | |||||||| |
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| T |
10560533 |
tatagaaggctgattggtagattactctacctaaatatcaccagaccagacatcacctatatcacacaacaattgagtcaatttctatctgctcctactc |
10560434 |
T |
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| Q |
211 |
aaactcatca |
220 |
Q |
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| T |
10560433 |
atactcatca |
10560424 |
T |
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