View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_low_14 (Length: 352)
Name: NF7794_low_14
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 37556800 - 37556465
Alignment:
| Q |
1 |
ataataaccggataaatacctggtgaaaacctcctcttctggtgacttccaagtaaaagaggtacaagtctaagattgtctcttggacattgatactgtc |
100 |
Q |
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| T |
37556800 |
ataataaccggacaaatacctggtgaaaacctcctcttctggtgacttccaagtaaaagaggtacaagtctaagattgtctctcggacattgaaactgtc |
37556701 |
T |
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| Q |
101 |
aagtagaattgaaacagaggtgcatggtcatataccctttattatccatcannnnnnnnatctaaataatctcataaaactttatataaaataaagttaa |
200 |
Q |
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| T |
37556700 |
aagtagaattgaaacagaggggcatggtcatatgccctttattatccatcattttttttatctaaataatctcataagactaaacacaaa-tgaagttaa |
37556602 |
T |
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| Q |
201 |
taacacttcatgtttccctgcatgttgaactcaacacaaatgaaaagtcaatagactctcttaagactaaaacctaactgcaagtattcttctttctaaa |
300 |
Q |
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| T |
37556601 |
taacacttcatgtttccctgcatgttgaactcaacacaaatgaaaagtcaatagactctcttaagactaaaacctaactgcaagtattcttctttctaaa |
37556502 |
T |
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| Q |
301 |
ttataacacattctactattctagtgaccttctttat |
337 |
Q |
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| T |
37556501 |
ttgtaacacattctactattctagtgaccttctttat |
37556465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 41551742 - 41551637
Alignment:
| Q |
16 |
atacctggtgaaaacctcctcttctggtgacttccaagtaaaagaggtacaagtcta-agattgtctcttggacattgatactgtcaagtagaattgaaa |
114 |
Q |
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| T |
41551742 |
atacctggtgataacctcctcttcttgtgacctccaagtaaaagaggtacaagtctagaga-tgtttctcggacattgaaactgccaaatagaattggaa |
41551644 |
T |
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| Q |
115 |
cagaggt |
121 |
Q |
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| T |
41551643 |
cagaggt |
41551637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 34255526 - 34255472
Alignment:
| Q |
16 |
atacctggtgaaaacctcctcttctggtgacttccaagtaaaagaggtacaagtc |
70 |
Q |
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| T |
34255526 |
atacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtc |
34255472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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