View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_low_16 (Length: 328)
Name: NF7794_low_16
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 55060860 - 55061157
Alignment:
| Q |
20 |
tttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggatctctgacaacaacaagtttatctttagtaac |
119 |
Q |
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| T |
55060860 |
tttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggatctctgacaacaaaaagtttatcttcagtaac |
55060959 |
T |
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| Q |
120 |
aaacacaattgaataagcacctttaactttttcacacgcttcaacaattatcgctat-aaaaggtctatgatttgaagttgcaataagatgaagcaaaac |
218 |
Q |
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| T |
55060960 |
aaacacaattgaataagcacctttaactttttcacacgcttcaacaattctcgctataaaaaggtctatgatttgaagttgcaataagatgaagcaaaac |
55061059 |
T |
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| Q |
219 |
ttcagtatcagaagtagtgttgaaaattgaaccagattcttcaagttcatttctcaaggaacggtaattgacgaagttaccattatgagcaacaccaa |
316 |
Q |
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| T |
55061060 |
ttcagtatcagaagtagtgttgaaaattgaaccagattcttcaagttcatttctcaaggaacggtaattgacgaagttaccattatgagcaacaccaa |
55061157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 316
Target Start/End: Original strand, 27357049 - 27357340
Alignment:
| Q |
25 |
gaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggatctctgacaacaacaagtttatctttagtaacaaaca |
124 |
Q |
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| T |
27357049 |
gaagcaaaaacaacagcaccattacttctcctccccataaccaaaggcctaaacccaaatggatccctcacagcaacaagcttatcctcagtaacaaaca |
27357148 |
T |
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| Q |
125 |
caattgaataagcacctttaactttttcacacgcttcaacaattatcgctataaaaggtctatgatttgaagttgcaataagatgaagcaaaacttcagt |
224 |
Q |
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| T |
27357149 |
caatcgaataagcaccttcaagcttctcacatgcatcaacaattcttaaaataaaaggtctatgctttgaagtagcaatcaaatgaagaacaacttcagt |
27357248 |
T |
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| Q |
225 |
atcagaagtagtgttgaaaattgaaccagattcttcaagttcatttctcaaggaacggtaattgacgaagttaccattatgagcaacaccaa |
316 |
Q |
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||||||||||||||| ||||| ||||| ||||||||| | | ||| || | ||| ||||| || || ||||| |||||||||||||||| |
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| T |
27357249 |
atcagaagtagtgttaaaaatcgaacctttttcttcaagcttagctcttaaagtacgataattaactaaattaccgttatgagcaacaccaa |
27357340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 44334066 - 44334166
Alignment:
| Q |
28 |
gcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggat-ctctgacaacaacaa---gtttatctttagtaacaaac |
123 |
Q |
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|||||||| ||||||| ||||| || |||| |||||||| ||||||||||| |||||||| |||||| | |||||| ||||||||| |||||||||| |
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| T |
44334066 |
gcaaaaactacagaaccgttactactacttcacataaccaaaggtcgaaaacaaaaaggatcctctgatagcaacaagttgtttatcttcagtaacaaac |
44334165 |
T |
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| Q |
124 |
a |
124 |
Q |
| |
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| |
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|
| T |
44334166 |
a |
44334166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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