View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_low_23 (Length: 261)
Name: NF7794_low_23
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 37159921 - 37160112
Alignment:
| Q |
9 |
tggtggtgactggactaaggacactagaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
108 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37159921 |
tggtggtgactggattaaggacactggaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
37160020 |
T |
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| Q |
109 |
tgnnnnnnnnnnaatggatggtagtgagtgtatacgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
200 |
Q |
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| T |
37160021 |
tgttttttttttaatggatggtagtgagtgtatatgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
37160112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 37151096 - 37151286
Alignment:
| Q |
9 |
tggtggtgactggactaaggacactagaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
108 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37151096 |
tggtggtgactggattaaggacactggaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
37151195 |
T |
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| Q |
109 |
tgnnnnnnnnnnaatggatggtagtgagtgtatacgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
200 |
Q |
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| T |
37151196 |
tg-tttttttttaatggatggtagtgagtgtatatgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
37151286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 37154281 - 37154184
Alignment:
| Q |
9 |
tggtggtgactggactaaggacactagaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgat |
106 |
Q |
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| T |
37154281 |
tggtggtgactggattaaggacactggaattccttactttccaactatacctgaacacaagaagcacaaaaagacagtgcttaaatggtgatcttgat |
37154184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 91373 - 91183
Alignment:
| Q |
9 |
tggtggtgactggactaaggacactagaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
108 |
Q |
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| T |
91373 |
tggtggtgactggattaaggacactggaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
91274 |
T |
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| Q |
109 |
tgnnnnnnnnnnaatggatggtagtgagtgtatacgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
200 |
Q |
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| T |
91273 |
tg-tttttttttaatggatggtagtgagtgtatacgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
91183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 94680 - 94487
Alignment:
| Q |
9 |
tggtggtgactggactaaggacactagaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
108 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
94680 |
tggtggtgactggattaaggacactggaattccttactatccaaatataccggaacacaagaagcacgaaaagacagtgcctaaatggtgatcttgatag |
94581 |
T |
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| Q |
109 |
tg--nnnnnnnnnnaatggatggtagtgagtgtatacgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
94580 |
tgttttttttttttaatggatggtagtgagtgtatacgaaaagtattcataattaatccctaactattacttttgtcgatccgttttgtcattt |
94487 |
T |
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