View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_low_3 (Length: 527)
Name: NF7794_low_3
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 3 - 510
Target Start/End: Complemental strand, 25584777 - 25584272
Alignment:
| Q |
3 |
agataggattgccagaagagtcgagtctgaagagaatatctaatatcattttcgtgtacagtaagaaaatcatgcaatcaggaaaaactcatcttgtgtg |
102 |
Q |
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| T |
25584777 |
agataggattaccagaagagtcgagtctgaagagaatatctaatatcattttcgtgtacagtaagaaaatcatgcaatcaggaaaaactcatcttgtgt- |
25584679 |
T |
|
| Q |
103 |
ttagagttggaaattatatttagattgtgttttgaatgaatacgacaatcatgtaacatatcaactgctacgctagtatgtcaatttattttatcaccaa |
202 |
Q |
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| T |
25584678 |
-tagagttggaaattatatttagattgtgttttgaatgaatacgacaatcatgtaacatatcaactgctacgctagcatgtcaatttattttatcacaaa |
25584580 |
T |
|
| Q |
203 |
tttttagagaatgtagccaaattgtgatagtgtataacaattgaatcacctgtaatggagtgataccaccagcgatgtcccagtcatttttatagtcagg |
302 |
Q |
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| T |
25584579 |
tttttagagaatgtagccaaattgtgatagtgtgtaacaattgaatcacctgtaatggcgtgacaccaccagcgatgtcccagtcatttttatagtcagg |
25584480 |
T |
|
| Q |
303 |
aacaatgtacttaggcactgcaccggataataccatggcagatatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggtt |
402 |
Q |
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| T |
25584479 |
aacaatgtacttaggcactgcaccggataataccatggcagatatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggtt |
25584380 |
T |
|
| Q |
403 |
gccattattgctgcctggatcccacaagtagtacctccaacaagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaata |
502 |
Q |
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| T |
25584379 |
gccattattgctgcctgaatcccacaagtagtacctccgacaagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaata |
25584280 |
T |
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| Q |
503 |
tgggtcct |
510 |
Q |
| |
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| |||||| |
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| T |
25584279 |
taggtcct |
25584272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 244 - 506
Target Start/End: Complemental strand, 25589379 - 25589117
Alignment:
| Q |
244 |
tgaatcacctgtaatggagtgataccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggcactgcaccggataataccatggcag |
343 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
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| T |
25589379 |
tgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggcag |
25589280 |
T |
|
| Q |
344 |
atatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctggatcccacaagtagtacctccaac |
443 |
Q |
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| T |
25589279 |
atatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttgac |
25589180 |
T |
|
| Q |
444 |
aagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatatggg |
506 |
Q |
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| T |
25589179 |
aagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatggg |
25589117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 244 - 506
Target Start/End: Complemental strand, 25599031 - 25598769
Alignment:
| Q |
244 |
tgaatcacctgtaatggagtgataccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggcactgcaccggataataccatggcag |
343 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
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| T |
25599031 |
tgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggcag |
25598932 |
T |
|
| Q |
344 |
atatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctggatcccacaagtagtacctccaac |
443 |
Q |
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| T |
25598931 |
atatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttgac |
25598832 |
T |
|
| Q |
444 |
aagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatatggg |
506 |
Q |
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||||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||| |
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| T |
25598831 |
aagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatggg |
25598769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 25589659 - 25589617
Alignment:
| Q |
5 |
ataggattgccagaagagtcgagtctgaagagaatatctaata |
47 |
Q |
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|||||||| |||||||||| || |||||||||||||||||||| |
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| T |
25589659 |
ataggattaccagaagagttgaatctgaagagaatatctaata |
25589617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 25599311 - 25599269
Alignment:
| Q |
5 |
ataggattgccagaagagtcgagtctgaagagaatatctaata |
47 |
Q |
| |
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|||||||| |||||||||| || |||||||||||||||||||| |
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| T |
25599311 |
ataggattaccagaagagttgaatctgaagagaatatctaata |
25599269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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