View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_low_4 (Length: 501)
Name: NF7794_low_4
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Original strand, 2522138 - 2522609
Alignment:
| Q |
19 |
caggtctgtttacaaggcaatttcgatgaatttggtaaaatagaaaaaggtcattgaatttccatggtttgttagggacggcgtgagcgaatcacagttc |
118 |
Q |
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| T |
2522138 |
caggtctgtttacaaggcaatttcgatgaatttggtaaaatagaaaaaggtcattgaatttccatggtttgttagggacggcgtgagcgaatcacagttc |
2522237 |
T |
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| Q |
119 |
aaccaagtcctcaacattgaattgaatgaaatcataaaggtatatatatgttcaacaatgtaaattttaagtctgaatattgaaattacatgatgaattt |
218 |
Q |
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| T |
2522238 |
aaccaagtcctcaacattgaattgaatgaaatcataaaggtatatatatgttcaacaatgtaaattttaagtctgaatattgaaattacattatgaattt |
2522337 |
T |
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| Q |
219 |
tattgaaattttatttgcaggcatgtaagcattatgatgaaagttggtgtccaaaatttactttgattgttgctcagaagaatcatcacactaggttctt |
318 |
Q |
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| T |
2522338 |
tattgaaattttatttgcaggcatgtaagtgttatgatgaaagttggtgtccaaagtttactttgattgttgctcagaagaatcatcacactaggttctt |
2522437 |
T |
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| Q |
319 |
caaagccaatgctcctcaagaaaatgtttcacctggtttgtcatttgaacagaaaatattaagtaaatattagaattggcttattattataatcttttat |
418 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2522438 |
caaagccaattctcctcaagaaaatgtttcacctggtttgtcatttgaacagaaaatattaagtaaatattagaattggcttattattataatcttttat |
2522537 |
T |
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| Q |
419 |
ttgtttatgcgtaggaactgttattgataacactatatgtcatcccaaaaacaatgacttctacgtgtgtgc |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
2522538 |
ttgtttatgcgtaggaactgttattgataacactatatgtcatcccaaagacaatgacttctacatgtgtgc |
2522609 |
T |
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