View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7794_low_5 (Length: 461)

Name: NF7794_low_5
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7794_low_5
NF7794_low_5
[»] chr2 (43 HSPs)
chr2 (14-454)||(10467667-10468099)
chr2 (11-430)||(10501438-10501849)
chr2 (11-454)||(10457991-10458427)
chr2 (12-454)||(10512776-10513207)
chr2 (11-294)||(10483494-10483776)
chr2 (226-448)||(7468445-7468666)
chr2 (88-327)||(10855910-10856149)
chr2 (96-447)||(10484149-10484496)
chr2 (130-321)||(7466163-7466354)
chr2 (224-454)||(10539829-10540045)
chr2 (97-447)||(10855309-10855652)
chr2 (224-454)||(10501934-10502157)
chr2 (111-454)||(10502120-10502459)
chr2 (215-321)||(27963986-27964092)
chr2 (215-321)||(28107783-28107889)
chr2 (209-454)||(10468408-10468634)
chr2 (219-392)||(10458953-10459118)
chr2 (214-320)||(10513854-10513960)
chr2 (362-454)||(10468292-10468384)
chr2 (221-439)||(10468699-10468912)
chr2 (245-327)||(9078299-9078381)
chr2 (174-433)||(10539180-10539432)
chr2 (107-327)||(10484763-10484983)
chr2 (244-454)||(10539549-10539757)
chr2 (109-320)||(10540006-10540215)
chr2 (333-454)||(10855847-10855970)
chr2 (245-447)||(7465355-7465550)
chr2 (287-448)||(10484041-10484195)
chr2 (224-392)||(10469003-10469163)
chr2 (223-325)||(10845698-10845800)
chr2 (224-317)||(7464916-7465009)
chr2 (342-453)||(10484689-10484803)
chr2 (224-379)||(10444798-10444951)
chr2 (108-187)||(10458387-10458466)
chr2 (224-327)||(10502830-10502933)
chr2 (332-454)||(10502632-10502754)
chr2 (415-457)||(10512871-10512913)
chr2 (224-321)||(10468175-10468272)
chr2 (327-454)||(10483775-10483902)
chr2 (327-447)||(7465843-7465969)
chr2 (110-187)||(10502421-10502498)
chr2 (109-157)||(10468595-10468643)
chr2 (415-447)||(10513747-10513779)
[»] chr1 (3 HSPs)
chr1 (11-387)||(24050249-24050615)
chr1 (226-392)||(24049948-24050107)
chr1 (416-448)||(18488808-18488840)
[»] chr7 (1 HSPs)
chr7 (340-441)||(8670754-8670855)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 10467667 - 10468099
Alignment:
Q  14 atcatgtacagtgactacttctccagcacgagccacttggatcgcctgtcgattttggagaagaatctcgattcgaatttcaaaagagatcttgcagaac 113  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||||    
T  10467667 atcatgtacagcgactatttctccagcacgagccacttggatcgcctgtcgattttggagaagaatcccaattagaatttaaaaagagatcttgcagaac 10467766  T
Q  114 aattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactcaacc 213  Q
    |||||||  || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  10467767 aattatatgaaggtcctccaacaacattcaatataatgagaagacccagaaatcatggtgaaaatctaaaaactgagccttacctcatgataactcaacc 10467866  T
Q  214 caaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaa-atgcaataaatgaaggcagagacaggaaaatga 312  Q
    ||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  10467867 caatcaaaagaggaacctgcatttgcagaaaagaaaggcttcagccacagaatcactagtctcaaatatgcaataaatgaaggcagtgacaggaaaatga 10467966  T
Q  313 tcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagacaag 412  Q
    |||||       | |||| |||||||||||||  ||||||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  10467967 tctta-------agagtgcacaccaccgcata--gtgttcaatcatgtttcatgcctcattaaactaataaaagtaaaaattagattttaaatagacaag 10468057  T
Q  413 gaagaacaattatacaaaagttctccaaagacattcaattta 454  Q
    | |||||||| |||||||||||| ||||||||||||||||||    
T  10468058 gcagaacaataatacaaaagttccccaaagacattcaattta 10468099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 430
Target Start/End: Original strand, 10501438 - 10501849
Alignment:
Q  11 gacatcatgtacagtgactacttctccagcacgagccacttggatcgcctgtcgattttggagaagaatctcgattcgaatttcaaaa-gagatcttgca 109  Q
    ||||||||| |||| ||||| |||||||||| |||||||||| ||||||||||||||||| |||||||||  |||| |||||| |||| ||||| |||||    
T  10501438 gacatcatgcacagcgactatttctccagcatgagccacttgaatcgcctgtcgattttgcagaagaatccagattagaatttaaaaaagagatattgca 10501537  T
Q  110 gaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactc 209  Q
    ||||||| |||||||| || ||| ||||||||||||| |||||||||  |||  ||||||| |||||| ||||||||||| |||||| ||||||||||||    
T  10501538 gaacaatcatacaaaattc-tccgacaacattcaatacaatgagaagatccacaaatcatgctgaaaa-ctaaaaactgacccctacctcatcataactc 10501635  T
Q  210 aacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaa 309  Q
    |  |||  ||||| ||||||||||||||| ||  ||||| || ||||||| || ||  ||||||| |||||||||||||| ||||||||||||| |||||    
T  10501636 acaccagtcaaataaggaacctgcatttggagagaagaagggtttcagccacaaaactactagtcacaaaatgcaataaacgaaggcagagacatgaaaa 10501735  T
Q  310 tgatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagac 409  Q
    ||||||| ||       |||| ||||  | ||||||||| |||| ||||||||||||||| ||||||||| ||||||| |||| |||| |||||||||||    
T  10501736 tgatcttgtg-------agtgcacacagctgcatattgttttcaatcatgtttcatgcctcattaaactattaaaagctaaaactagaatttaaatagac 10501828  T
Q  410 aaggaagaacaattatacaaa 430  Q
    | || |||||||| |||||||    
T  10501829 atggcagaacaatcatacaaa 10501849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 10457991 - 10458427
Alignment:
Q  11 gacatcatgtacagtgactacttctccagcacgagccacttggatcgcctgtcgattttggagaagaatctcgattcgaatttcaaaagagatcttgcag 110  Q
    |||||||||||||| || || |||||||||| ||||| |||| |  |||||||||||||  |||| |||| ||||| |||||| ||||||||| ||||||    
T  10457991 gacatcatgtacagcgattatttctccagcatgagcctcttgaaatgcctgtcgattttaaagaaaaatcacgattagaatttaaaaagagatattgcag 10458090  T
Q  111 aacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactca 210  Q
    |||||||||||||||||  ||| ||||||||||||||||| ||||   |||  ||||||||||| |||||||||||| |  || || ||| ||  || |     
T  10458091 aacaattatacaaaagttttccgacaacattcaatataataagaacatccacaaatcatggtgataatctaaaaactcacacccacctcaccagtacgct 10458190  T
Q  211 acccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaat 310  Q
      | || ||||| |||||||||||| |||||  |||||||||||||||| || ||| ||||| | |||||||||||||||||||| ||||||| |||||     
T  10458191 cacaaaccaaataaggaacctgcatatgcagagaagaaaggcttcagccacaaaataactagactcaaaatgcaataaatgaaggaagagacatgaaaag 10458290  T
Q  311 gatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagaca 410  Q
    ||||| |||        ||| ||  |||  |||||||| ||||| ||||||||||||||  |||||||| ||||||| ||||||||| |||||||||| |    
T  10458291 gatctaatg-------ggtgcacttcactccatattgttttcagacatgtttcatgcctcgttaaactagtaaaagctaaaattagaatttaaatagata 10458383  T
Q  411 aggaagaacaattatacaaaagttctccaaagacattcaattta 454  Q
     |  |||||||||||||||| |||||||||||||||| ||||||    
T  10458384 tgacagaacaattatacaaatgttctccaaagacattaaattta 10458427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 12 - 454
Target Start/End: Original strand, 10512776 - 10513207
Alignment:
Q  12 acatcatgtacagtgactacttctccagcacgagccacttggatcgcctgtcgattttggagaagaatctcgattcgaatttcaaaagagatcttgcaga 111  Q
    ||||||||||||| ||| | |||||||||| | ||||||   | | ||||| ||||| ||||||||||| ||||| ||||||  |||||||| | |||||    
T  10512776 acatcatgtacagcgacgatttctccagcatgtgccactccaaacacctgttgatttgggagaagaatcccgattagaattt--aaagagatatagcaga 10512873  T
Q  112 acaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactcaa 211  Q
    |||||||||||||||| ||||||  |||||||||||| ||| |||  |||  ||||||||||||||| |||||||| | ||| || ||||||| || ||     
T  10512874 acaattatacaaaagttctccaatgacattcaatatattgaaaagatccataaatcatggtgaaaatttaaaaactaatccccacctcatcattacgcac 10512973  T
Q  212 cccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatg 311  Q
    || |||||||  |||| |||||||||||   ||| |||| ||||||||  | ||||||||||| ||||||||||||||| |||||||||||| ||| |||    
T  10512974 ccaaaacaaacaaggagcctgcatttgc---aaacaaagtcttcagccaaaaaatcactagtctcaaaatgcaataaataaaggcagagacatgaatatg 10513070  T
Q  312 atcttatgagagcacagtgaacaccaccgcatatt-gtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagaca 410  Q
    ||||||||       |||| |||| || ||||||| || |||| ||||||  |||||||  ||| |||| ||| ||| ||||||||| |||||||||| |    
T  10513071 atcttatg-------agtgcacacaactgcatattcgttttcaatcatgtgccatgcctctttagactactaagagctaaaattagaatttaaatagata 10513163  T
Q  411 aggaagaacaattatacaaaagttctccaaagacattcaattta 454  Q
     || | || ||| |||||||| |||||| |||||||||||||||    
T  10513164 tggcaaaaaaataatacaaaatttctcccaagacattcaattta 10513207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 10483494 - 10483776
Alignment:
Q  11 gacatcatgtacagtgactacttctccagcacgagccacttggatcgcctgtcgattttggagaagaatctcgattcgaatttcaaaagagatcttgcag 110  Q
    ||||||||||| || ||||| |||||||||| ||||  |||| ||  |||||| |||| ||||||||||| ||||| |||||| ||||||||| ||||||    
T  10483494 gacatcatgtatagcgactatttctccagcatgagcttcttgaattacctgtcaatttgggagaagaatcccgattagaatttaaaaagagatattgcag 10483593  T
Q  111 aacaattatacaaaagtcctccaacaacattcaata-taatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactc 209  Q
    |||||| |||||||||| |||||||||||||||||| ||||  ||||  |||  |||||||||||||||||||||||||| ||| || |||||| || ||    
T  10483594 aacaatcatacaaaagttctccaacaacattcaatattaat--gaagatccacaaatcatggtgaaaatctaaaaactgacccccacctcatcacaagtc 10483691  T
Q  210 aacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaag 294  Q
    | ||| | || ||||||||||||||||||||| ||||||||||||||||  || ||||||||| |  ||  ||||||||||||||    
T  10483692 atcccgatcatatgaggaacctgcatttgcagaaaagaaaggcttcagctacaaaatcactagcctaaatgtgcaataaatgaag 10483776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 226 - 448
Target Start/End: Complemental strand, 7468666 - 7468445
Alignment:
Q  226 gaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagagca 325  Q
    |||||||||||| ||   |||||||||||||||| || ||||||||||| |||||||||||||||||| ||||| | | ||||||||||||||||| |||    
T  7468666 gaacctgcattttcaaagaagaaaggcttcagccacaaaatcactagtctcaaaatgcaataaatgaaagcagaaatatgaaaatgatcttatgagtgca 7468567  T
Q  326 cagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagacaaggaagaacaattat 425  Q
    | ||| |||| || ||||||||| |||| |||||||| ||||| |  |||| || ||||||| ||||||||| |||||||||||| | ||||||||||||    
T  7468566 ctgtgcacactactgcatattgttttcactcatgttttatgcc-tcgtaaattagtaaaagctaaaattagaatttaaatagacatgaaagaacaattat 7468468  T
Q  426 acaaaagttctccaaagacattc 448  Q
    ||||||||||  |||||||||||    
T  7468467 acaaaagttcagcaaagacattc 7468445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 88 - 327
Target Start/End: Original strand, 10855910 - 10856149
Alignment:
Q  88 gaatttcaaaagagatcttgcagaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaact 187  Q
    |||||| ||||||||| | |||||||| || ||||||||| ||||||  |||||| || ||||  | ||  |||  ||||||||||||||| ||||||||    
T  10855910 gaatttaaaaagagatatggcagaacagttttacaaaagttctccaaagacattcgatttaattgggagatccacaaatcatggtgaaaatttaaaaact 10856009  T
Q  188 gagccctacttcatcataactcaacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaata 287  Q
     | | | || ||||||| || |||||||| ||||||||||||||||||||||||  |||||||||||||||| || |||||||||||  |||||||||||    
T  10856010 aacctccacctcatcattacgcaacccaatcaaatgaggaacctgcatttgcagagaagaaaggcttcagccacaaaatcactagtcttaaaatgcaata 10856109  T
Q  288 aatgaaggcagagacaggaaaatgatcttatgagagcaca 327  Q
    ||  || ||||||||| ||||||||||||||||| |||||    
T  10856110 aacaaaagcagagacatgaaaatgatcttatgagtgcaca 10856149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 96 - 447
Target Start/End: Original strand, 10484149 - 10484496
Alignment:
Q  96 aaagagatcttgcagaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagcccta 195  Q
    |||||||| | |||||||||||||| ||| || ||||||  ||||||  | ||||| ||||  |||  | ||||||||||||| |||||||| | ||| |    
T  10484149 aaagagatatggcagaacaattatataaatgttctccaaagacattcggtttaatgggaagatccacaattcatggtgaaaatgtaaaaactaacccc-a 10484247  T
Q  196 cttcatcataactcaacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaagg 295  Q
    | |||| ||   ||||||||| || || |||||||||||||| ||   |||||||||||||||| || |||||| |||| |||||||| ||||||||| |    
T  10484248 cctcattat---tcaacccaatcacataaggaacctgcattttcaaagaagaaaggcttcagccacaaaatcaccagtctcaaaatgctataaatgaaag 10484344  T
Q  296 cagagacaggaaaatgatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaatta 395  Q
    |||| | |  |||||||||||||||| |||| | | ||||||| || |||||| |||| ||||||||| ||||| ||||||  | ||||||| |||||||    
T  10484345 cagaaatacaaaaatgatcttatgagtgcaccgagcacaccactgcttattgttttcaatcatgtttcgtgcctcattaaataagtaaaagctaaaatta 10484444  T
Q  396 gattttaaatagacaaggaagaacaattatacaaaagttctccaaagacatt 447  Q
     | |||| ||||| | ||| ||||| ||||||||||||||| ||||||||||    
T  10484445 aaatttatatagatatggatgaacatttatacaaaagttctgcaaagacatt 10484496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 7466354 - 7466163
Alignment:
Q  130 tccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactcaacccaaacaaatgaggaac 229  Q
    ||||||||||| |||||||||||||||  |||  |||||||||||||||||||||||||| |||||| ||||||||  |||  |||  ||||||||||||    
T  7466354 tccaacaacatccaatataatgagaagatccataaatcatggtgaaaatctaaaaactgacccctacatcatcatagttcacaccagtcaaatgaggaac 7466255  T
Q  230 ctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgag 321  Q
    ||||||||||||  ||||| || ||||||| || ||  |||| || |||||| ||||||| ||||||||||||| ||||||||| |||||||    
T  7466254 ctgcatttgcagagaagaagggtttcagccacaaaactactactcgcaaaattcaataaacgaaggcagagacatgaaaatgattttatgag 7466163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 224 - 454
Target Start/End: Original strand, 10539829 - 10540045
Alignment:
Q  224 aggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagag 323  Q
    |||||||||||||| ||   |||||||||||||||| || ||||||| ||| |||||||||||||||||| ||||||||| ||||||||| | |||||      
T  10539829 aggaacctgcattttcaaagaagaaaggcttcagccacaaaatcacttgtctcaaaatgcaataaatgaaagcagagacatgaaaatgatataatgagtt 10539928  T
Q  324 cacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagacaaggaagaacaatt 423  Q
    ||||       |||| |||||||||||||| |||||       ||| |||||||||  |||||| ||||||| | |||||||||| | ||||||||||||    
T  10539929 caca-------ccactgcatattgtgttcaatcatg-------cctcattaaactaggaaaagctaaaattacaatttaaatagatatggaagaacaatt 10540014  T
Q  424 atacaaaagttctccaaagacattcaattta 454  Q
    ||||||||||||||||||||||||| |||||    
T  10540015 atacaaaagttctccaaagacattcgattta 10540045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 97 - 447
Target Start/End: Original strand, 10855309 - 10855652
Alignment:
Q  97 aagagatcttgcagaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctac 196  Q
    ||||||| | |||||||||  |||||||||| |||||| ||||||| || |||||||||    ||  |||||||||||||||||||||||  | |||       
T  10855309 aagagatatggcagaacaacaatacaaaagttctccaaaaacattcgatttaatgagaaaattcacaaatcatggtgaaaatctaaaaaccaaccccggt 10855408  T
Q  197 ttcatcataact---caacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaa 293  Q
     | ||||||| |   || ||| | ||||| |||||||||||||| ||| ||||||||||||||||| || ||| |||||||  |||||||||||||||||    
T  10855409 cttatcataattacgcaccccgatcaaataaggaacctgcattttcagaaaagaaaggcttcagccacaaaataactagtcttaaaatgcaataaatgaa 10855508  T
Q  294 ggcagagacaggaaaatgatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaat 393  Q
     ||||||||| |||||||||||||||       |||| ||||||    | ||||| ||||||| |||||||||||| ||||||||| ||||||  |||||    
T  10855509 agcagagacatgaaaatgatcttatg-------agtgcacacca--tgacattgt-ttcagtcgtgtttcatgcctcattaaactagtaaaagttaaaat 10855598  T
Q  394 tagattttaaatagacaaggaagaacaattatacaaaagttctccaaagacatt 447  Q
    | || |||||| |||   |  | |||||||||||| ||||||||||||||||||    
T  10855599 tcgaatttaaagagatgtgacaaaacaattatacagaagttctccaaagacatt 10855652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 224 - 454
Target Start/End: Original strand, 10501934 - 10502157
Alignment:
Q  224 aggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagag 323  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||  |||||   |||||||||  ||||||||  |||||| ||| |||||| |    
T  10501934 aggaacctgcatttgcagggaagaaaggcttcagccacaaaatcactagtgtcaaaacaaaataaatgagagcagagacgtgaaaataatcgtatgagtg 10502033  T
Q  324 cacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagacaaggaagaacaatt 423  Q
    | ||       |||| ||||| ||| || | |||||||||||| || ||||||||| ||||||| ||||||||| |||||||||| | || | |||| ||    
T  10502034 cgca-------ccactgcatactgtttttaatcatgtttcatgtctcattaaactagtaaaagctaaaattagaatttaaatagatatggcaaaacagtt 10502126  T
Q  424 atacaaaagttctccaaagacattcaattta 454  Q
    |||||||||||||||||||||| || |||||    
T  10502127 atacaaaagttctccaaagacaatcgattta 10502157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 454
Target Start/End: Original strand, 10502120 - 10502459
Alignment:
Q  111 aacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactca 210  Q
    |||| |||||||||||| ||||||  ||| || || ||||| ||||  |||  ||||||||||||||| |||||||| | |||  |||    || | |||    
T  10502120 aacagttatacaaaagttctccaaagacaatcgatttaatgggaagatccacaaatcatggtgaaaatgtaaaaactaaccccacctt----attattca 10502215  T
Q  211 acccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaat 310  Q
    |||||| || || |||||||||||||| ||   |||||||||||||||| |  ||||||||||| || |||||||||||| || ||||| ||  |||||     
T  10502216 acccaaccacataaggaacctgcattttcaaagaagaaaggcttcagccaccaaatcactagtctcataatgcaataaattaaagcagaaacgtgaaaag 10502315  T
Q  311 gatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagaca 410  Q
    |||| |||||| |||| ||| ||||| | ||||||| |  | |  |||||||||||||| |||||  || ||||||| ||||||| | | |  ||||  |    
T  10502316 gatcgtatgagtgcactgtgcacaccgctgcatattcttgttatccatgtttcatgcctcattaatttagtaaaagctaaaattaaaatatgcatagcta 10502415  T
Q  411 aggaagaacaattatacaaaagttctccaaagacattcaattta 454  Q
     ||| ||||||| || |||||||||||||||||||||| |||||    
T  10502416 tggatgaacaataatgcaaaagttctccaaagacattcgattta 10502459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 27963986 - 27964092
Alignment:
Q  215 aaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatc 314  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| |  |||||||| || |||| ||||||||||||| ||||||||| ||||||||||    
T  27963986 aaacaaatgaggaacctgcatttgcataaaacaaaggcttcagccacgaaatcactaatctcaaagtgcaataaatgaaagcagagacatgaaaatgatc 27964085  T
Q  315 ttatgag 321  Q
    |||||||    
T  27964086 ttatgag 27964092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 215 - 321
Target Start/End: Complemental strand, 28107889 - 28107783
Alignment:
Q  215 aaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatc 314  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| |  |||||||| || |||| ||||||||||||| ||||||||| ||||||||||    
T  28107889 aaacaaatgaggaacctgcatttgcataaaacaaaggcttcagccacgaaatcactaatctcaaagtgcaataaatgaaagcagagacatgaaaatgatc 28107790  T
Q  315 ttatgag 321  Q
    |||||||    
T  28107789 ttatgag 28107783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 454
Target Start/End: Original strand, 10468408 - 10468634
Alignment:
Q  209 caacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaa 308  Q
    |||||||| || || |||||||||||||| ||   ||||||| ||| |||| || ||||||||||| |||||||||||||||||| ||||||||  ||||    
T  10468408 caacccaatcacataaggaacctgcattttcaaagaagaaagactttagccacaaaatcactagtctcaaaatgcaataaatgaaagcagagacttgaaa 10468507  T
Q  309 atgatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaataga 408  Q
    |||||||||||||  ||                   |||| |||| ||||||||||||| |  |||||||| ||||||| ||||||||| ||||||| ||    
T  10468508 atgatcttatgagtcca-------------------ttgttttcaatcatgtttcatgcttcgttaaactagtaaaagctaaaattagaatttaaatgga 10468588  T
Q  409 caaggaagaacaattatacaaaagttctccaaagacattcaattta 454  Q
     | ||||||||| |||||||||||||||||||| ||||| ||||||    
T  10468589 tatggaagaacatttatacaaaagttctccaaaaacatttaattta 10468634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 392
Target Start/End: Original strand, 10458953 - 10459118
Alignment:
Q  219 aaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttat 318  Q
    |||||||||||||||||||||||  ||| || ||||||||  || |||||| |||| |||| ||||| ||||||| | ||||||| ||||||||||||||    
T  10458953 aaatgaggaacctgcatttgcagagaagtaaagcttcagcaacaaaatcacaagtctcaaattgcaacaaatgaaagaagagacatgaaaatgatcttat 10459052  T
Q  319 gagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaa 392  Q
    |       |||| ||||||| ||||||||| ||||||||| |||||||||| ||||||||  ||||||| ||||    
T  10459053 g-------agtgcacaccactgcatattgttttcagtcat-tttcatgcctcattaaactggtaaaagcaaaaa 10459118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 10513854 - 10513960
Alignment:
Q  214 caaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgat 313  Q
    |||| |||||||||||||||||||||||  |||||||||||||||  ||  || || |||  |||||||||||||||||| ||||| |||||||||||||    
T  10513854 caaagaaatgaggaacctgcatttgcagagaagaaaggcttcagcaacaagataacaagtgtcaaaatgcaataaatgaaagcagaaacaggaaaatgat 10513953  T
Q  314 cttatga 320  Q
    |||||||    
T  10513954 cttatga 10513960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 362 - 454
Target Start/End: Original strand, 10468292 - 10468384
Alignment:
Q  362 tcatgccttattaaactaataaaagccaaaattagattttaaatagacaaggaagaacaattatacaaaagttctccaaagacattcaattta 454  Q
    |||||||| ||||||||| |||||||  |||||||| |||||||||| | | |||||||||||| |||||||||||||||||||||| |||||    
T  10468292 tcatgcctcattaaactagtaaaagctgaaattagaatttaaatagatatgaaagaacaattatccaaaagttctccaaagacattcgattta 10468384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 439
Target Start/End: Original strand, 10468699 - 10468912
Alignment:
Q  221 atgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatga 320  Q
    |||||||||||||||||||||  || || |||||||| | || ||||||||||| ||| |||||||||  ||| |||||||   ||||||||| ||||||    
T  10468699 atgaggaacctgcatttgcagagaaaaagggcttcagtcacacaatcactagtctcaatatgcaataagcgaaagcagagaagtgaaaatgattttatga 10468798  T
Q  321 gagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagatttt--aaatagacaaggaagaa 418  Q
    | ||       ||||||| ||||| ||| ||| ||||| |||||||||| |||||||||  ||| || ||||| ||| |||  ||||||| | || ||||    
T  10468799 gggc-------acaccactgcataatgttttcggtcatttttcatgcctcattaaactagaaaatgctaaaataagaatttagaaatagatatggcagaa 10468891  T
Q  419 caattatacaaaagttctcca 439  Q
    |||||| ||||||||||||||    
T  10468892 caattagacaaaagttctcca 10468912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 9078381 - 9078299
Alignment:
Q  245 agaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagagcaca 327  Q
    |||||| |||||||| || ||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  9078381 agaaagacttcagccacaaaatcactagacacaaaatgcaataaatgaaagcagagacatgaaaatgatcttatgagtgcaca 9078299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 433
Target Start/End: Original strand, 10539180 - 10539432
Alignment:
Q  174 aaaatctaaaaactgagccctacttcatcataactcaacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagt 273  Q
    |||||||||||||| |  || || ||||||| || || ||||| | ||| ||||| ||||||||| ||  |||||| ||||  | | || ||| || |||    
T  10539180 aaaatctaaaaactaactcccacctcatcattacgcaccccaatcgaattaggaatctgcatttggagagaagaaaagcttttgtcacaaaattacgagt 10539279  T
Q  274 cccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttatt 373  Q
    | ||||||| ||||| |||| | ||||||| ||||||||||||||||  |||||       |||| ||||||||| |||| ||||||||||||||| |||    
T  10539280 ctcaaaatggaataagtgaaagaagagacatgaaaatgatcttatgaatgcaca-------ccactgcatattgttttcaatcatgtttcatgcctcatt 10539372  T
Q  374 aaactaataaaagccaaaattagattttaaatagacaaggaagaacaattatacaaaagt 433  Q
    |||||| ||| | | ||||||||| ||||| |||| | || |||||| |||||| |||||    
T  10539373 aaactagtaatacctaaaattagaatttaattagatatggcagaacacttataccaaagt 10539432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 107 - 327
Target Start/End: Original strand, 10484763 - 10484983
Alignment:
Q  107 gcagaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataa 206  Q
    ||||||||  ||||||||||| ||||||  ||||||||| | ||  ||||  |||  |||||||| ||||||||||||||| | ||| |  ||||| |      
T  10484763 gcagaacagatatacaaaagttctccaaagacattcaattttataggaagatccacaaatcatggcgaaaatctaaaaactaaccccgatctcatctttt 10484862  T
Q  207 ctcaacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacagga 306  Q
    | || | ||| | ||| |||||||||||||||||   ||||||| |||||||  || |||||| |||| |||||| ||||||||||| | ||| ||| ||    
T  10484863 cgcacctcaatcgaatcaggaacctgcatttgcaaagaagaaagacttcagcaacaaaatcacaagtctcaaaatacaataaatgaaagaagatacatga 10484962  T
Q  307 aaatgatcttatgagagcaca 327  Q
    ||||||||||||||| |||||    
T  10484963 aaatgatcttatgagtgcaca 10484983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 454
Target Start/End: Original strand, 10539549 - 10539757
Alignment:
Q  244 aagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagagcacagtgaacaccaccgcat 343  Q
    ||||||||||||| || || ||||||| |||  ||||   |||||||||| ||||||||| ||||||||||||       || |||| ||||||| ||||    
T  10539549 aagaaaggcttcaaccacaaaatcactggtctaaaaacaaaataaatgaaagcagagacatgaaaatgatctt-------cagagtgcacaccactgcat 10539641  T
Q  344 at----tgtgttcagtcatgtttcatgccttattaaactaat-aaaagccaaaattagattttaaatagacaaggaagaacaattatacaaaagttctcc 438  Q
    ||    ||| |||| ||||||||||||||||| || |||| | |||||| ||||||||| || ||| ||| | ||   ||||||||||||||||||||||    
T  10539642 atatattgttttcaatcatgtttcatgccttactagactagttaaaagctaaaattagaattgaaagagatatggccaaacaattatacaaaagttctcc 10539741  T
Q  439 aaagacattcaattta 454  Q
    ||||||||| ||||||    
T  10539742 aaagacattgaattta 10539757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 109 - 320
Target Start/End: Original strand, 10540006 - 10540215
Alignment:
Q  109 agaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataact 208  Q
    ||||||||||||||||||| ||||||  |||||| || ||||||||||  |||  |||||||||||||||||||||||| | ||| |    ||  |  |     
T  10540006 agaacaattatacaaaagttctccaaagacattcgatttaatgagaagatccacaaatcatggtgaaaatctaaaaactaacccccatcatattctctcg 10540105  T
Q  209 caacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaa 308  Q
    ||   ||| | |||||||||||| |||||||||  ||||| ||||||| |  || ||||||||||| |||||||||||||||||| ||||||| |  |||    
T  10540106 cactgcaatcgaatgaggaacctacatttgcagagaagaagggcttcaac--cacaatcactagtctcaaaatgcaataaatgaaagcagagaaatcaaa 10540203  T
Q  309 atgatcttatga 320  Q
    | ||||||||||    
T  10540204 acgatcttatga 10540215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 454
Target Start/End: Original strand, 10855847 - 10855970
Alignment:
Q  333 caccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagatttt--aaatagacaaggaagaacaattatacaaa 430  Q
    |||||| ||||||||| |||| ||||||||||||||| | ||||||| ||||||| |||||| || |||  ||| ||| | || |||||| || ||||||    
T  10855847 caccactgcatattgttttcaatcatgtttcatgcctcactaaactagtaaaagctaaaatttgaatttaaaaagagatatggcagaacagttttacaaa 10855946  T
Q  431 agttctccaaagacattcaattta 454  Q
    |||||||||||||||||| |||||    
T  10855947 agttctccaaagacattcgattta 10855970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 447
Target Start/End: Complemental strand, 7465550 - 7465355
Alignment:
Q  245 agaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagagcacagtgaacaccaccgcata 344  Q
    ||||||||||||||| |  ||||||||||| |  ||||||||||||||| ||| ||||| |||||| |||||| ||  |||||       |||| |||||    
T  7465550 agaaaggcttcagccaccaaatcactagtctcgtaatgcaataaatgaaagcacagacatgaaaattatcttacgattgcaca-------ccactgcata 7465458  T
Q  345 ttgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagacaaggaagaacaattatacaaaagttctccaaagac 444  Q
    |||| || | |||||||||||| || |||||  || ||||||| ||||||| | |||| ||||  | ||| |||| || || ||||||||||||||||||    
T  7465457 ttgtttttaatcatgtttcatggctcattaatttagtaaaagctaaaattaaaatttacatagctatggatgaacgataatgcaaaagttctccaaagac 7465358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 448
Target Start/End: Original strand, 10484041 - 10484195
Alignment:
Q  287 aaatgaaggcagagacaggaaaatgatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaag 386  Q
    ||||||| ||||||||| ||||||||| ||||||| |||||       || | ||| ||||| |||| |||| |||| ||| | |||||| || ||||||    
T  10484041 aaatgaaagcagagacatgaaaatgattttatgagtgcaca-------ccgctgcacattgttttcaatcatatttcttgcttcattaaattagtaaaag 10484133  T
Q  387 ccaaaattagattttaaatagacaaggaagaacaattatacaaaagttctccaaagacattc 448  Q
    | ||||||||| |||||| ||| | || |||||||||||| ||| |||||||||||||||||    
T  10484134 ctaaaattagaatttaaagagatatggcagaacaattatataaatgttctccaaagacattc 10484195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 392
Target Start/End: Original strand, 10469003 - 10469163
Alignment:
Q  224 aggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagag 323  Q
    ||||||||||||||||||  |||||| |||||| |  || ||||||||||  |||| |||||||||| || ||||||||| |||||||||||||||        
T  10469003 aggaacctgcatttgcagagaagaaaagcttcaacaacaaaatcactagtttcaaa-tgcaataaattaaagcagagacatgaaaatgatcttatg---- 10469097  T
Q  324 cacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaa 392  Q
       |||  ||||||| ||||||||| ||||||||| || |||||||  |||||||  ||||||| ||||    
T  10469098 ---agtacacaccactgcatattgttttcagtcattttccatgcctctttaaactggtaaaagcaaaaa 10469163  T

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Target: chr2; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 10845698 - 10845800
Alignment:
Q  223 gaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgaga 322  Q
    |||||||||||||||| ||  || ||||| ||||||| || |||||| | |  |||||||||||||||||| |||||| || ||||||| ||||||||||    
T  10845698 gaggaacctgcatttgtagacaataaaggtttcagccacaaaatcacaaatttcaaaatgcaataaatgaaagcagaggcatgaaaatgttcttatgaga 10845797  T
Q  323 gca 325  Q
    |||    
T  10845798 gca 10845800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 7465009 - 7464916
Alignment:
Q  224 aggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatctta 317  Q
    ||||| ||||||||| ||  |||||||||||||||  || |||||| |||| |||||||||||||||||| ||| ||||| |||||| ||||||    
T  7465009 aggaatctgcatttgtagagaagaaaggcttcagcatcaaaatcacaagtctcaaaatgcaataaatgaaagcacagacatgaaaattatctta 7464916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 10484689 - 10484803
Alignment:
Q  342 atattgtgttcagtcatgtttcatgccttattaaa-ctaataaaagccaaaattagattttaaatag--acaaggaagaacaattatacaaaagttctcc 438  Q
    ||||||| |||| ||||||||||||||| |||||| ||| ||||  | ||||| ||| |||||| ||  ||| || ||||||  ||||||||||||||||    
T  10484689 atattgttttcaatcatgtttcatgcctcattaaaactagtaaagtctaaaatcagaatttaaaaagcgacatggcagaacagatatacaaaagttctcc 10484788  T
Q  439 aaagacattcaattt 453  Q
    |||||||||||||||    
T  10484789 aaagacattcaattt 10484803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 379
Target Start/End: Original strand, 10444798 - 10444951
Alignment:
Q  224 aggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaa-----aatgcaataaatgaaggcagagacaggaaaatgatcttat 318  Q
    ||||||||||||| | ||  |||||||||||||||| || ||||||||||| |||     ||   |||||||||| || |||||| ||||||||||||||    
T  10444798 aggaacctgcattagaagagaagaaaggcttcagccacaaaatcactagtctcaagtctcaacaaaataaatgaaagcggagacatgaaaatgatcttat 10444897  T
Q  319 gagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaacta 379  Q
    ||| |||||       |||| |||||||||  ||| ||||||||||||||| |||||||||    
T  10444898 gagtgcaca-------ccactgcatattgttgtcaatcatgtttcatgcctcattaaacta 10444951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 10458387 - 10458466
Alignment:
Q  108 cagaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaact 187  Q
    ||||||||||||||||| || ||||||  ||||| ||| ||||| ||||  |||  ||||||||||||||||||||||||    
T  10458387 cagaacaattatacaaatgttctccaaagacattaaatttaatgggaagatccacaaatcatggtgaaaatctaaaaact 10458466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 10502830 - 10502933
Alignment:
Q  224 aggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagag 323  Q
    ||||| ||||||||||||  ||||| |||||||||  || |||||| |||  |||||||||||||||||| ||| | ||| ||| ||||||||| ||| |    
T  10502830 aggaatctgcatttgcagagaagaatggcttcagcaacaaaatcacgagtatcaaaatgcaataaatgaaagcacaaacatgaagatgatcttacgagtg 10502929  T
Q  324 caca 327  Q
    ||||    
T  10502930 caca 10502933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 454
Target Start/End: Original strand, 10502632 - 10502754
Alignment:
Q  332 acaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaa--atagacaaggaagaacaattatacaa 429  Q
    |||||||  |||||||| |||| ||||||||||||||| ||||||||| ||||||| || || ||| |||||  | ||| | || ||||||| |||||||    
T  10502632 acaccacttcatattgttttcaatcatgtttcatgcctcattaaactagtaaaagctaatatcagaatttaaagagagatatggcagaacaagtatacaa 10502731  T
Q  430 aagttctccaaagacattcaattta 454  Q
    || |||||  ||||||||| |||||    
T  10502732 aaattctc--aagacattcgattta 10502754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 10512871 - 10512913
Alignment:
Q  415 agaacaattatacaaaagttctccaaagacattcaatttattg 457  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  10512871 agaacaattatacaaaagttctccaatgacattcaatatattg 10512913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 10468175 - 10468272
Alignment:
Q  224 aggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgag 321  Q
    ||||||||||||| | ||  |||||||||||||||| || ||||||||||| |||||    |||||||||  |||||||| |||| | ||||||||||    
T  10468175 aggaacctgcattcgaagacaagaaaggcttcagccacaaaatcactagtctcaaaacaatataaatgaaaacagagacatgaaagttatcttatgag 10468272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 454
Target Start/End: Original strand, 10483775 - 10483902
Alignment:
Q  327 agtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattaga-ttttaaatagacaaggaagaacaattat 425  Q
    |||| ||||||| || |||||| |||| ||| ||||||||||| ||||||  | ||||||| ||||||||| |||| || ||  | || | | || ||||    
T  10483775 agtgcacaccactgcgtattgttttcaatcaagtttcatgcctcattaaagaagtaaaagctaaaattagaattttgaagagttatgggaca-cagttat 10483873  T
Q  426 acaaaagttctccaaagacattcaattta 454  Q
    |||||||||||||||||| ||||||||||    
T  10483874 acaaaagttctccaaagatattcaattta 10483902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 447
Target Start/End: Complemental strand, 7465969 - 7465843
Alignment:
Q  327 agtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaatta------gattttaaatagacaaggaagaaca 420  Q
    |||| ||||||| ||||||||| || | |||||||||| |||| |||||  || ||||||| |||||||      || |||||| ||| | || | ||||    
T  7465969 agtgcacaccactgcatattgtttttaatcatgtttcaagcctcattaatttagtaaaagctaaaattaaaattagaatttaaaaagatatggcaaaaca 7465870  T
Q  421 attatacaaaagttctccaaagacatt 447  Q
     ||||||||||||||||||||||||||    
T  7465869 tttatacaaaagttctccaaagacatt 7465843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 10502421 - 10502498
Alignment:
Q  110 gaacaattatacaaaagtcctccaacaacattcaatataatgagaagtcccaggaatcatggtgaaaatctaaaaact 187  Q
    ||||||| || ||||||| ||||||  |||||| || ||||| ||||  |||  ||||||||||||||||||||||||    
T  10502421 gaacaataatgcaaaagttctccaaagacattcgatttaatgggaagatccacaaatcatggtgaaaatctaaaaact 10502498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 10468595 - 10468643
Alignment:
Q  109 agaacaattatacaaaagtcctccaacaacattcaatataatgagaagt 157  Q
    |||||| |||||||||||| |||||| |||||| ||| |||||||||||    
T  10468595 agaacatttatacaaaagttctccaaaaacatttaatttaatgagaagt 10468643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 10513747 - 10513779
Alignment:
Q  415 agaacaattatacaaaagttctccaaagacatt 447  Q
    |||||||| ||||||||||||||||||||||||    
T  10513747 agaacaatcatacaaaagttctccaaagacatt 10513779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 24050615 - 24050249
Alignment:
Q  11 gacatcatgtacagtgactacttctccagcacgagccacttggatcgcctgtcgattttggagaagaatctcgattcgaatttcaaaagagatcttgcag 110  Q
    |||||||||||||| ||||| |||||||||||||||| |||| || ||||||| |||| |||||||| || ||||| |||||| ||||||||| ||||||    
T  24050615 gacatcatgtacagcgactatttctccagcacgagcctcttg-attgcctgtcaatttgggagaagagtcccgattagaatttaaaaagagatattgcag 24050517  T
Q  111 aacaattatacaaaagtcctccaacaacatt-caatataatgagaagtcccaggaatcatggtgaaaatctaaaaactgagccctacttcatcataactc 209  Q
    ||||| |||| |||||| ||||||  ||||| || | ||||  ||||  |||  |||||||||| ||||||||||| | | | | |  |||||||    |    
T  24050516 aacaactatagaaaagttctccaaagacattccagtttaataggaagatccacaaatcatggtg-aaatctaaaaattaacctccatctcatcattttgc 24050418  T
Q  210 aacccaaacaaatgaggaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaa 309  Q
    |   ||| |||||||||||||||||||||||| ||  |||| |||||| | || ||||||||||| ||||||||||||| |||| ||||||| | | |||    
T  24050417 acttcaagcaaatgaggaacctgcatttgcagcaa--aaagacttcagtcacacaatcactagtctcaaaatgcaataagtgaaagcagagaaatgtaaa 24050320  T
Q  310 tgatcttatgagagcacagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagc 387  Q
    ||||||||||       |||| ||||||| |||||| || |||| ||||||||||||||| ||||  ||| |||||||    
T  24050319 tgatcttatg-------agtgcacaccactgcatatagttttcaatcatgtttcatgcctcattaggctagtaaaagc 24050249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 392
Target Start/End: Complemental strand, 24050107 - 24049948
Alignment:
Q  226 gaacctgcatttgcaggaaagaaaggcttcagccgcagaatcactagtcccaaaatgcaataaatgaaggcagagacaggaaaatgatcttatgagagca 325  Q
    |||||||||||||| |  |||||| || |||||  || |||||| ||||  ||||||||||||||||| ||||||||| |||||| ||| ||||          
T  24050107 gaacctgcatttgccgagaagaaaagcatcagcaacaaaatcacaagtcataaaatgcaataaatgaaagcagagacatgaaaattatcctatg------ 24050014  T
Q  326 cagtgaacaccaccgcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaa 392  Q
     |||| ||||||| ||||||||| |||| |||| |||||||||| ||||||||  ||||||| ||||    
T  24050013 -agtgcacaccactgcatattgttttcaatcatttttcatgcctcattaaactggtaaaagctaaaa 24049948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 448
Target Start/End: Original strand, 18488808 - 18488840
Alignment:
Q  416 gaacaattatacaaaagttctccaaagacattc 448  Q
    ||||||||||||||||| |||||||||||||||    
T  18488808 gaacaattatacaaaagctctccaaagacattc 18488840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 441
Target Start/End: Complemental strand, 8670855 - 8670754
Alignment:
Q  340 gcatattgtgttcagtcatgtttcatgccttattaaactaataaaagccaaaattagattttaaatagacaaggaagaacaattatacaaaagttctcca 439  Q
    ||||||||| |||| || |||||||||||| ||||||| | ||||||| ||||||||| |||||| ||| | || |||||||||||||||| ||||||||    
T  8670855 gcatattgttttcaatcgtgtttcatgcctcattaaacaagtaaaagctaaaattagaatttaaagagatatggcagaacaattatacaaatgttctcca 8670756  T
Q  440 aa 441  Q
    ||    
T  8670755 aa 8670754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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