View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7794_low_6 (Length: 457)

Name: NF7794_low_6
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7794_low_6
NF7794_low_6
[»] chr3 (10 HSPs)
chr3 (257-444)||(47508930-47509108)
chr3 (8-178)||(47509189-47509352)
chr3 (276-323)||(11233926-11233973)
chr3 (261-323)||(43176309-43176371)
chr3 (261-323)||(42424345-42424407)
chr3 (257-323)||(22153974-22154040)
chr3 (257-323)||(622354-622420)
chr3 (261-323)||(35425567-35425629)
chr3 (282-323)||(46473263-46473304)
chr3 (257-321)||(37323777-37323841)
[»] chr5 (11 HSPs)
chr5 (257-323)||(18638736-18638802)
chr5 (260-323)||(21062895-21062958)
chr5 (261-323)||(33743228-33743290)
chr5 (257-323)||(3722971-3723037)
chr5 (257-323)||(27340979-27341045)
chr5 (257-319)||(8725315-8725377)
chr5 (257-323)||(34952300-34952366)
chr5 (276-323)||(30301339-30301386)
chr5 (276-323)||(39840598-39840645)
chr5 (258-323)||(14914481-14914546)
chr5 (258-323)||(20125501-20125566)
[»] chr7 (8 HSPs)
chr7 (271-323)||(36186789-36186841)
chr7 (257-323)||(30391256-30391322)
chr7 (257-323)||(17500807-17500873)
chr7 (257-323)||(17552341-17552407)
chr7 (258-323)||(31436528-31436592)
chr7 (257-323)||(47644819-47644885)
chr7 (276-323)||(5724167-5724214)
chr7 (257-323)||(49089059-49089125)
[»] chr6 (7 HSPs)
chr6 (257-323)||(7693425-7693491)
chr6 (257-323)||(28647330-28647396)
chr6 (257-323)||(30622134-30622200)
chr6 (257-323)||(2333485-2333551)
chr6 (261-323)||(3821518-3821580)
chr6 (257-323)||(19788971-19789037)
chr6 (257-323)||(9200220-9200286)
[»] chr4 (10 HSPs)
chr4 (257-323)||(10096637-10096703)
chr4 (285-323)||(41154166-41154204)
chr4 (257-323)||(42516744-42516810)
chr4 (257-323)||(11012235-11012301)
chr4 (257-323)||(17363340-17363406)
chr4 (257-323)||(29525968-29526034)
chr4 (257-323)||(34114012-34114078)
chr4 (271-323)||(7795124-7795176)
chr4 (271-323)||(42882579-42882631)
chr4 (283-323)||(45274399-45274439)
[»] chr1 (18 HSPs)
chr1 (281-323)||(21154357-21154399)
chr1 (257-323)||(30530294-30530360)
chr1 (257-323)||(4511672-4511738)
chr1 (257-323)||(33669718-33669784)
chr1 (257-323)||(49596351-49596417)
chr1 (261-323)||(51250186-51250248)
chr1 (257-323)||(52369006-52369072)
chr1 (275-323)||(50884665-50884713)
chr1 (280-319)||(44503553-44503592)
chr1 (257-323)||(34002215-34002281)
chr1 (261-319)||(42792397-42792455)
chr1 (259-320)||(5315323-5315384)
chr1 (257-323)||(8464408-8464474)
chr1 (257-323)||(24611954-24612020)
chr1 (257-323)||(33422114-33422180)
chr1 (257-323)||(44112564-44112630)
chr1 (281-323)||(50017318-50017360)
chr1 (257-323)||(52417641-52417707)
[»] scaffold0072 (1 HSPs)
scaffold0072 (257-323)||(14444-14510)
[»] chr8 (9 HSPs)
chr8 (257-323)||(34996255-34996321)
chr8 (257-318)||(5642290-5642351)
chr8 (257-318)||(5644231-5644292)
chr8 (271-323)||(11155777-11155829)
chr8 (257-323)||(323975-324041)
chr8 (276-323)||(9550318-9550365)
chr8 (276-323)||(27631076-27631123)
chr8 (258-323)||(7129644-7129709)
chr8 (259-323)||(8074620-8074684)
[»] chr2 (7 HSPs)
chr2 (257-323)||(11442782-11442848)
chr2 (257-323)||(42665707-42665773)
chr2 (258-323)||(36909738-36909803)
chr2 (276-323)||(42554903-42554950)
chr2 (257-323)||(546280-546346)
chr2 (273-323)||(38912496-38912546)
chr2 (259-323)||(7497886-7497950)
[»] scaffold0020 (1 HSPs)
scaffold0020 (257-323)||(156016-156082)
[»] scaffold0154 (1 HSPs)
scaffold0154 (276-323)||(4443-4490)
[»] scaffold0057 (1 HSPs)
scaffold0057 (257-323)||(21469-21535)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 257 - 444
Target Start/End: Complemental strand, 47509108 - 47508930
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatcaataatatcgctactttttacattttgatccctt 356  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||| ||    
T  47509108 ggaccaataagaaaagaacaaataaaaattgtcatcaaagttgtatcaaatggttgtacatatatca---------ctactttttacattttggtccatt 47509018  T
Q  357 tatattgaggaagctattattgattatgtaataataatctaactacagtcatatacaatgtttcgtaagacatgcaacaatacaaact 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47509017 tatattgaggaagctattattgattatgtaataataatctaactacagtcatatacaatgtttcgtaagacatgcaacaatacaaact 47508930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 47509352 - 47509189
Alignment:
Q  8 tgaaatgaacttttcaattaaaattgtcgcaaccgttactccaaaatgtacctatttcatactaaacaaaattaaatttgttatatgatgataagtcatg 107  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47509352 tgaaatgaacttttcaattaaaattgtcgcaaccgtta-------atgtacctatttcatactaaacaaaattaaatttgttatatgatgataagtcatg 47509260  T
Q  108 gaatatagtcgtccatatgttttcaaaagcggccgtatttccatctaattatcataatttatatttataca 178  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| || |||| ||||    
T  47509259 gaatatagtcgtccatatgtttttaaaagcggccgtattttcatctaattgtcataatgtacatttgtaca 47509189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 11233973 - 11233926
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  11233973 aaataaaagttgtcatcaaagttgtaccaaatggttgtacatatatca 11233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 43176309 - 43176371
Alignment:
Q  261 caataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||| || ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  43176309 caataaaaagagagcaaataaaagttatcatcaaagttgtatcaaatggttgtatatatatca 43176371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 42424345 - 42424407
Alignment:
Q  261 caataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||| |||| |||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  42424345 caatgagaagagaataaatgaaagttgtcatcaaagttgtaccaaatggatgtacatatatca 42424407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 22153974 - 22154040
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| | || ||| ||||| ||||||||||| ||||||||| |||||||||||||| ||||||    
T  22153974 ggaccaatgaaaagagagcaaatgaaagttgtcattaaagttgtaccaaatggttgtacaaatatca 22154040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 622420 - 622354
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  ||||||||||||||| |||||||||  |||||||||||  ||||||||    
T  622420 ggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatca 622354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 35425629 - 35425567
Alignment:
Q  261 caataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||| ||| ||||| |||||||||||||||| |||| |||||| || |||||||||||    
T  35425629 caatgagaagagagcaaatgaaagttgtcatcaaagatgtaccaaatgattatacatatatca 35425567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 46473263 - 46473304
Alignment:
Q  282 aagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||| ||||||||||||||||||||| || ||||||    
T  46473263 aagttgtcataaaagttgtatcaaatggttgttcaaatatca 46473304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 37323777 - 37323841
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatat 321  Q
    |||||||||||||  ||  |||| ||| ||||||||||||||||  ||||| |||||||||||||    
T  37323777 ggaccaataagaagggagaaaatgaaaattgtcatcaaagttgtcccaaatagttgtacatatat 37323841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 18638802 - 18638736
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||||||||||||||||||||||||  |||||||||||||||||||||    
T  18638802 ggaccaataagaaaagagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatca 18638736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 21062895 - 21062958
Alignment:
Q  260 ccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||| ||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  21062895 ccaataagaaaagagcaaatgaaagttgtcatcaaaattgtaccaaatggttgtacatatatca 21062958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 33743290 - 33743228
Alignment:
Q  261 caataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  33743290 caatgagaagagagcaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatca 33743228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 3723037 - 3722971
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||| || |||  |||| ||||||||||||||||||||  |||||||||||||||||||||    
T  3723037 ggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatca 3722971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 27340979 - 27341045
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||| || ||| ||||| ||||||||||||||| ||||| |||||| ||||||||||||||    
T  27340979 ggaccaataaaaagagagcaaatgaaagttgtcatcaaaattgtaccaaatgattgtacatatatca 27341045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 8725377 - 8725315
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatat 319  Q
    ||||||||||||| |||  |||| ||||||||||||||||||||  |||||||||||| ||||    
T  8725377 ggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtatatat 8725315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 34952366 - 34952300
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  ||||||||||||||||||||||| |  |||||  ||||||||||||||    
T  34952366 ggaccaataagaagagagaaaataaaagttgtcatcaaagttatcccaaataattgtacatatatca 34952300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 30301339 - 30301386
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| ||||||||||||||||||||  || ||||||||||||||||||    
T  30301339 aaatgaaagttgtcatcaaagttgttacatatggttgtacatatatca 30301386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 39840645 - 39840598
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||||||||||||| |  ||||| |||||||||||||||    
T  39840645 aaataaaagttgtcatcaaagttatcacaaatagttgtacatatatca 39840598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 14914481 - 14914546
Alignment:
Q  258 gaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||||| |||  |||  |||||||||||||||||| ||| |||||| |||||| ||||||    
T  14914481 gaccaataagaagagataaaaacaaagttgtcatcaaagttatatgaaatggatgtacaaatatca 14914546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 20125501 - 20125566
Alignment:
Q  258 gaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||| |||| |||  |||| ||||||||||||||||||||  ||||| |||||| ||||||||    
T  20125501 gaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatagttgtatatatatca 20125566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 36186841 - 36186789
Alignment:
Q  271 agaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  36186841 agaacaaataaaagttgtcatcaaagttataccaaatggttgtacatatatca 36186789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 30391256 - 30391322
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  30391256 ggaccaatgagaagagagtaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatca 30391322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 17500807 - 17500873
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||| |||||| |||||||||||||  |||||||||||||||||||||    
T  17500807 ggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatca 17500873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 17552407 - 17552341
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||| |||||| |||||||||||||  |||||||||||||||||||||    
T  17552407 ggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatca 17552341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 31436528 - 31436592
Alignment:
Q  258 gaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||| |||| |||  |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  31436528 gaccaatgagaagagataaaatgaaagttgtcatcaaa-ttgtatcaaatggttgtacatatatca 31436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 47644819 - 47644885
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| ||| ||||| |||||||||||||||||| || |||||  ||||||||||||||    
T  47644819 ggaccaatgagaagagagcaaatgaaagttgtcatcaaagttataccaaataattgtacatatatca 47644885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 5724167 - 5724214
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||||||| || |||| | ||||||||||||||||||||    
T  5724167 aaataaaagttgtcatccaatttgtcttaaatggttgtacatatatca 5724214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 49089125 - 49089059
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  |||| ||||||||||||||||||||   |||| |||||||||||||||    
T  49089125 ggaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatca 49089059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 7693425 - 7693491
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||||||| ||||||||||||||||  |||||||||||||||||||||    
T  7693425 ggaccaataagaagagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtacatatatca 7693491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 28647396 - 28647330
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| ||||||||| |||||||||| |||||||||| ||||||| |||||||||||||    
T  28647396 ggaccaatgagaagagaacaaattaaagttgtcaacaaagttgtaccaaatggatgtacatatatca 28647330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 30622134 - 30622200
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||  ||||| |||||||||||||||    
T  30622134 ggaccaataagaagagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtacatatatca 30622200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 2333485 - 2333551
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||||||| |||  |||||||| ||||||||||| |||| ||||||| ||||||||||||||    
T  2333485 ggactaataagaagagagaaaataaaaattgtcatcaaaattgtttcaaatgattgtacatatatca 2333551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 3821518 - 3821580
Alignment:
Q  261 caataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||| ||||||||||||| |||||||||||||| || ||||||  |||||||||||||    
T  3821518 caatgagaagagaacaaataaaaattgtcatcaaagttataccaaatgaatgtacatatatca 3821580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 19789037 - 19788971
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  |||| | ||||||||||||||||||  |||||||||||||||||||||    
T  19789037 ggaccaatgagaagagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacatatatca 19788971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 9200220 - 9200286
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||| ||| |||  |||||||||||||||||||||||||   | ||||||||||| ||||||    
T  9200220 ggaccaataggaagagagtaaataaaagttgtcatcaaagttgttagatatggttgtacaaatatca 9200286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 10096703 - 10096637
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| ||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  10096703 ggaccaatgagaagagagcaaatgaaagttgtcatcaaagttgtaccaaatggctgtacatatatca 10096637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 41154166 - 41154204
Alignment:
Q  285 ttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41154166 ttgtcatcaaagttgtatcaaatggttgtacatatatca 41154204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 42516744 - 42516810
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||| |||| ||||||||||||||| ||||  |||||||||||||||||||||    
T  42516744 ggaccaatgagaagagaaaaaatgaaagttgtcatcaaaattgtcacaaatggttgtacatatatca 42516810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 11012235 - 11012301
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||| ||||||||||||||||||||  || ||| ||||||||||||||    
T  11012235 ggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcacatatgattgtacatatatca 11012301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 17363340 - 17363406
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| | || ||| ||||| |||||||||||||||||||||| |||||||| |||| ||||||    
T  17363340 ggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtataaaatggttttacaaatatca 17363406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 29525968 - 29526034
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| ||||||||| |||||||||| |||| || || ||||||| |||||||||||||    
T  29525968 ggaccaatgagaagagaacaaattaaagttgtcaacaaaattataccaaatggatgtacatatatca 29526034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 34114078 - 34114012
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||| ||||||  ||||||||||||  |||||| ||||||||||||||    
T  34114078 ggaccaataagaagagagaaaatgaaagttaccatcaaagttgttccaaatgattgtacatatatca 34114012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 7795124 - 7795176
Alignment:
Q  271 agaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| ||| |||||||||||| || |||||||||||||||||| || ||||||    
T  7795124 agaagaaaaaaaagttgtcataaaggttgtatcaaatggttgttcaaatatca 7795176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 42882579 - 42882631
Alignment:
Q  271 agaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||| ||| ||||||||||||||||  || ||||||||||||||||||    
T  42882579 agaaaaaatgaaaattgtcatcaaagttgtcacacatggttgtacatatatca 42882631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 45274399 - 45274439
Alignment:
Q  283 agttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  45274399 agttgtcatcaaagttgtcccaaatagttgtacatatatca 45274439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 21154357 - 21154399
Alignment:
Q  281 aaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21154357 aaagttgtcatcaaagttgtatcaaatggttgtacatatatca 21154399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 30530360 - 30530294
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||| ||||||||||||||||||||  |||||||||||||||||||||    
T  30530360 ggaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatca 30530294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 4511738 - 4511672
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||| |||| |||||||||||| |||||||  |||||||||||||||||||||    
T  4511738 ggaccaatgagaagagaaaaaatgaaagttgtcatctaagttgtcccaaatggttgtacatatatca 4511672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 33669784 - 33669718
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||| |||| | ||||||||||||||||||  |||||||||||||||||||||    
T  33669784 ggaccaatgagaagagaaaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatca 33669718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 49596351 - 49596417
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| ||||  || ||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  49596351 ggaccaatgagaatggagcaaattaaagttatcatcaaagttgtaccaaatggttgtacatatatca 49596417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 51250248 - 51250186
Alignment:
Q  261 caataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||| |||  ||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  51250248 caataagaagagagaaaataaaagttgtcatcaaagttatttcaaatgattgtacatatatca 51250186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 52369072 - 52369006
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| ||| ||||| |||||||||||||||||||||  |||| |||||||||||||||    
T  52369072 ggaccaatgagaatagagcaaatgaaagttgtcatcaaagttgtactaaatagttgtacatatatca 52369006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 50884713 - 50884665
Alignment:
Q  275 caaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  50884713 caaatgaaagttttcatcaaagttgtaccaaatggttgtacatatatca 50884665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 44503592 - 44503553
Alignment:
Q  280 aaaagttgtcatcaaagttgtatcaaatggttgtacatat 319  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  44503592 aaaagttgtcatcaaagttgtatcaaatgattgtacatat 44503553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 34002281 - 34002215
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||| |||||||| |||||||||||  ||||| |||||||||||||||    
T  34002281 ggaccaataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatca 34002215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 42792397 - 42792455
Alignment:
Q  261 caataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatat 319  Q
    |||||| || |||| |||||||| |||||||||||||||||| ||||| ||||||||||    
T  42792397 caataaaaagagaataaataaaaattgtcatcaaagttgtataaaatgattgtacatat 42792455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 5315323 - 5315384
Alignment:
Q  259 accaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatata 320  Q
    ||||||||||| |||  |||| ||||| |||||||||||||| | |||||||||||||||||    
T  5315323 accaataagaaaagagaaaatgaaagtcgtcatcaaagttgtctaaaatggttgtacatata 5315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 8464474 - 8464408
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||| || |||  |||| |||||||||||||||||||   ||| |||||||||||||||||    
T  8464474 ggaccaataaaaagagagaaaatgaaagttgtcatcaaagttggcccaagtggttgtacatatatca 8464408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 24611954 - 24612020
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||| ||  ||| |||||||||||||||||||||||||   | ||||||||||| ||||||    
T  24611954 ggaccaataaaaattgaataaataaaagttgtcatcaaagttgttagatatggttgtacaaatatca 24612020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 33422180 - 33422114
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  ||||||||||||||| |||||||||  |||||||||||  ||||||||    
T  33422180 ggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatca 33422114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 44112564 - 44112630
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  ||||||||||||||| |||||||||  |||||||||||  ||||||||    
T  44112564 ggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatca 44112630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 50017360 - 50017318
Alignment:
Q  281 aaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||    
T  50017360 aaagttatcaacaaagttgtctcaaatggttgtacatatatca 50017318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 52417641 - 52417707
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||| |||||| |||||||||||||  ||||| |||||| ||||||||    
T  52417641 ggaccaataagaagagagaaaatgaaagttatcatcaaagttgttccaaatagttgtatatatatca 52417707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 14510 - 14444
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| ||||||||| ||| |||||| |||||||||| ||||||| |||||||||||||    
T  14510 ggaccaatgagaagagaacaaattaaaattgtcaacaaagttgtaccaaatggatgtacatatatca 14444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 34996321 - 34996255
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| | || ||| ||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  34996321 ggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtaccaaatagttgtacatatatca 34996255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 5642351 - 5642290
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacata 318  Q
    ||||||||||||| |||  ||||||||||||||||||||||| | |||||| ||||||||||    
T  5642351 ggaccaataagaagagagaaaataaaagttgtcatcaaagttatctcaaatagttgtacata 5642290  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 5644292 - 5644231
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacata 318  Q
    ||||||||||||| |||  ||||||||||||||||||||||| | |||||| ||||||||||    
T  5644292 ggaccaataagaagagagaaaataaaagttgtcatcaaagttatctcaaatagttgtacata 5644231  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 11155829 - 11155777
Alignment:
Q  271 agaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||||||||||||||||||||||||  ||||||||| |||||||||||    
T  11155829 agaaaaaataaaagttgtcatcaaagttgtcacaaatggttctacatatatca 11155777  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 324041 - 323975
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||||| |||  |||||||||||||||||||||||||   | ||||||||||| ||||||    
T  324041 ggaccaataagaagagagtaaataaaagttgtcatcaaagttgttagatatggttgtacagatatca 323975  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 9550365 - 9550318
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| ||||||||||| ||||||||||||||  |||||||||||||||    
T  9550365 aaattaaagttgtcatgaaagttgtatcaaagagttgtacatatatca 9550318  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 27631076 - 27631123
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||| ||||||||||||||||||  | |||||||||||||||||||    
T  27631076 aaataatagttgtcatcaaagttgtcaccaatggttgtacatatatca 27631123  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 7129644 - 7129709
Alignment:
Q  258 gaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||||| |||  |||  |||||||||||||||||||||| |||||  |||||| ||||||    
T  7129644 gaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatgaatgtacaaatatca 7129709  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 8074684 - 8074620
Alignment:
Q  259 accaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||||||| |||  |||| ||||||||||||||||||||   | ||| ||||||||||||||    
T  8074684 accaataagaagagagaaaatgaaagttgtcatcaaagttgtcaaatatgattgtacatatatca 8074620  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 11442782 - 11442848
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| | || ||||||||| |||||||||| |||||||||| ||||||| |||||||||||||    
T  11442782 ggaccaatgaaaagagaacaaattaaagttgtcaacaaagttgtaccaaatggatgtacatatatca 11442848  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 42665773 - 42665707
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| | || ||| ||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  42665773 ggaccaatgaaaaaagagcaaatgaaagttgtcatcaaagttgtaccaaatggttgtacaaatatca 42665707  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 36909803 - 36909738
Alignment:
Q  258 gaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||||||| |||  |||  |||||||||||||||||||||| |||||| |||||| ||||||    
T  36909803 gaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatggatgtacaaatatca 36909738  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 42554903 - 42554950
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||| |||||||| |||||||||||| ||||||||||||| |||||||    
T  42554903 aaatgaaagttgttatcaaagttgtaccaaatggttgtacttatatca 42554950  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 546346 - 546280
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  ||||||||||||||| |||||||||  |||||||||||  ||||||||    
T  546346 ggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatca 546280  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 38912546 - 38912496
Alignment:
Q  273 aacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    ||||||| |||||| | || ||||||||| |||||||||||||||||||||    
T  38912546 aacaaatgaaagttattattaaagttgtaccaaatggttgtacatatatca 38912496  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 7497950 - 7497886
Alignment:
Q  259 accaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||| |||| |||  ||||||||||||||| |||||||||  |||||||||||  ||||||||    
T  7497950 accaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatca 7497886  T

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Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 156016 - 156082
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  |||| | ||||||||||||||||||  |||||||||||||||||||||    
T  156016 ggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatca 156082  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 4443 - 4490
Alignment:
Q  276 aaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||| ||||||||||||||||||  | |||||||||||||||||||    
T  4443 aaataatagttgtcatcaaagttgtcaccaatggttgtacatatatca 4490  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 21535 - 21469
Alignment:
Q  257 ggaccaataagaacagaacaaataaaagttgtcatcaaagttgtatcaaatggttgtacatatatca 323  Q
    |||||||| |||| |||  |||| |||||||| |||||||||||  |||||| ||||||||||||||    
T  21535 ggaccaatgagaagagagaaaatgaaagttgttatcaaagttgtcacaaatgattgtacatatatca 21469  T

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