View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7794_low_9 (Length: 415)
Name: NF7794_low_9
Description: NF7794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7794_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 13348372 - 13348756
Alignment:
| Q |
16 |
atgaaccatatcatccaagcgctcttagttataagtgaaaaaatatcaactaatataaaacaagtacaaaataatcctcgtatatattggatttaaaggg |
115 |
Q |
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| T |
13348372 |
atgaaccatcttatccaagcgctcttagttataagtgacaaaatattaactaatataaaacaagtacaaaataatcctcgtaaatattggatttaaaggg |
13348471 |
T |
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| Q |
116 |
gnnnnnnntatcttgaagaatgaatgaaatattacaaacctgcagcaggggtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaataacaga |
215 |
Q |
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| T |
13348472 |
gaaaaaaatatcttgaagaatgaatgaaatattacaaacctgcagcaggggtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaataacaga |
13348571 |
T |
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| Q |
216 |
aggctttctgaagaaaatgacatcaaggaagacccaagtaagcaagctagtagcagtgcaagcatgtgtgttcaagacagccaatgaagcatccaagcca |
315 |
Q |
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| T |
13348572 |
aggctttctgaagaaaatgacatcaaggaagacccaagtaagcaagctagtagcagtgcaagcatgtgtgttcaagacagccaatgaagcatccaagcca |
13348671 |
T |
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| Q |
316 |
actgagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttg |
400 |
Q |
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| T |
13348672 |
actgagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttg |
13348756 |
T |
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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 39725518 - 39725594
Alignment:
| Q |
166 |
gtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaataacagaaggctttctgaagaaaatgacatcaag |
242 |
Q |
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| T |
39725518 |
gtaatgcaaacaagaccagtaatcatgccttgaacagctccaataactgatggttttttgaagaatatgacatcaag |
39725594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 5624573 - 5624630
Alignment:
| Q |
329 |
ctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataag |
386 |
Q |
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| T |
5624573 |
ctccaccattgaaccctgaccaacccatccataacaatcctgctcctgctagcataag |
5624630 |
T |
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