View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7795_low_1 (Length: 848)
Name: NF7795_low_1
Description: NF7795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7795_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 791; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 16 - 830
Target Start/End: Original strand, 32988195 - 32989009
Alignment:
| Q |
16 |
aatattccaatttcacccttgttagctttgcataaacttgatttcactttgaaccagcagttattcatcatgccctgaacaaatgcatagtaaaagcttg |
115 |
Q |
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| T |
32988195 |
aatattccaatttcacccttgttagctttgcataaacttgatttcactttgaaccagcagttattcatcatgccctgaacaaatgcatagtaaaagcttg |
32988294 |
T |
|
| Q |
116 |
ttaattcagatgctttattaaagcaaagttttaacgtgatttacgccctcagtcaataaaaattgatatatttgaaccaaatttaagaccaaatacgtta |
215 |
Q |
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| T |
32988295 |
ttaattcagatgctttattaaagcaaagttttaacgtgatttacgccctcagttaataaaaattgatatatttgaaccaaatttttgaccaaatacgtta |
32988394 |
T |
|
| Q |
216 |
acttttgtagacttaattttttcttatatattgtaccggagctagtactaagttacaaggtttggagtatgtgcacttgccatgagattccaaatgaggt |
315 |
Q |
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| T |
32988395 |
acttttgtagacttaattttttcttatatattgtaccggagctagtactaagttacaaggtttggagtatgtgtacttgccatgagattccaaatgaggt |
32988494 |
T |
|
| Q |
316 |
tctgaggttgggtgttgagggactcatcccaagctcgtacagcaatatccttggctcctagaaggtccaacacttcaacttccaaggaccaaaagcacca |
415 |
Q |
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| T |
32988495 |
tctgaggttgggtgttgagggactcatcccaagctcgtacagcaatatccttggctcctagaaggtccaacacttcaacttccaaggaccaaaagcacca |
32988594 |
T |
|
| Q |
416 |
gcaccagtacttaccgtacttgtttggtttttctgaatggtccaatgtgcatacttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacc |
515 |
Q |
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| T |
32988595 |
gcaccagtacttaccgtacttgtttggtttttctgaatggtccaatgtgcatacttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacc |
32988694 |
T |
|
| Q |
516 |
tttctaccaccccctgcacaatcatcaataactgaggttactctctttgttttcaacgaagttcaaagtcaaatacatgtagtgacagcttgaaattaga |
615 |
Q |
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| T |
32988695 |
tttctaccaccccctgcacaatcatcaataactgaggttactctctttgttttcaacgaagttcaaagtcaaatacatgtagtgacagcttgaaattaga |
32988794 |
T |
|
| Q |
616 |
cacagtaaaagaggattagtgcatctttagatttaaattttggggagtcaaaagtgattatgaaacttaataaaattgagtttagactttagacaagaac |
715 |
Q |
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| T |
32988795 |
cacagtaaaagaggattagtgcatctttagatttaaattttggggagtcaaaagtgattataaaacttaataaaattgagtttagactttagacaagaac |
32988894 |
T |
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| Q |
716 |
tgattttgactaaaagttagaatatactaacttgttagaaccaaacacacccttaatctttgggaacaaacaaaaatgattttcctctagttgcaatagt |
815 |
Q |
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| T |
32988895 |
tgattttgactaaaagttagaatatactaacttgttagaaccaaacacacccttaatctttgggaacaaacaaaaatgattttcctctcgttgcaatagt |
32988994 |
T |
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| Q |
816 |
ataaaactcacctga |
830 |
Q |
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| T |
32988995 |
ataaaactcacctga |
32989009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 341 - 535
Target Start/End: Original strand, 32960034 - 32960228
Alignment:
| Q |
341 |
atcccaagctcgtacagcaatatccttggctcctagaaggtccaacacttcaacttccaaggaccaaaagcaccagcaccagtacttaccgtacttgttt |
440 |
Q |
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|||||| || ||||| ||||| || |||||||| | || ||| ||||||||||| || || |||||||||||||| ||||| || || || || ||| || |
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| T |
32960034 |
atcccatgcacgtactgcaatctctttggctccaaaaaagtctaacacttcaacctctaaagaccaaaagcaccaacaccaatattttccatatttgctt |
32960133 |
T |
|
| Q |
441 |
ggtttttctgaatggtccaatgtgcatacttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacctttctaccaccccctgcaca |
535 |
Q |
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| T |
32960134 |
ggtttctcttgatgctccaatttgcatacttgccatgtttcaccaccgtccatcgtcacttccacccttgtcacctttctcccaccaccttcaca |
32960228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 302 - 530
Target Start/End: Original strand, 24863496 - 24863724
Alignment:
| Q |
302 |
attccaaatgaggttctgaggttgggtgttgagggactcatcccaagctcgtacagcaatatccttggctcctagaaggtccaacacttcaacttccaag |
401 |
Q |
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|||||||||||| || | ||||||||||||||| | ||||||||| |||| ||||||||| ||||||| ||| |||||||||| ||| |||||||||| |
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| T |
24863496 |
attccaaatgagattttcaggttgggtgttgagtgcctcatcccatgctcttacagcaatctccttggttccaagaaggtccagcacctcaacttccaga |
24863595 |
T |
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| Q |
402 |
gaccaaaagcaccagcaccagtacttaccgtacttgtttggtttttctgaatggtccaatgtgcatacttgccatgtttcaccaccgtccattgttactt |
501 |
Q |
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| T |
24863596 |
gaccaaaagcaccaacaccaatattttccatattttgttggtttttctggatggtccaatgtgcacacgtgccatgtttctccaccgtccattgttacct |
24863695 |
T |
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| Q |
502 |
caacacgtgtcacctttctaccaccccct |
530 |
Q |
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| T |
24863696 |
cgactcgtgtcacttttctaccaccccct |
24863724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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