View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7795_low_3 (Length: 412)
Name: NF7795_low_3
Description: NF7795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7795_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 6338573 - 6338188
Alignment:
| Q |
8 |
agattattctcctgttgtctatattttttgtttctgtcctctgacacacacatacccatgtctgtaaaactggcatgtaggttatctgagtgacttggac |
107 |
Q |
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| T |
6338573 |
agattcttctcctgttgtctatattttttgtttctgtcctctgacacacacatacccatgtctgtaaaactggcatgtaggttatctgagtgacttggac |
6338474 |
T |
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| Q |
108 |
tacaagtttttgatatgataattgtgtagagaaacttcagcattcaaatgtggctttgaaacatgtcttaatatagttttatacttttaaatcttctttt |
207 |
Q |
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| T |
6338473 |
cacaagtttttgatatgataattgtgtagagaaacttcagcattcaaatgtggctttgaaacatgtcttaatatagttttatacttttaaatcttctttt |
6338374 |
T |
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| Q |
208 |
ttccttactttggggggatttattctgctcatttttgttcataggaccctcacattgtcaccagttctcatgattctacaattaagatgtgggaccttag |
307 |
Q |
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| T |
6338373 |
ttccttactttggggggacttattctgctcatttttgttcataggactctcacgttgtcaccagttctcatgattctacaattaagatgtgggaccttag |
6338274 |
T |
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| Q |
308 |
atatggtaatttattgttgatttttcatatcttcttgtttttctctgcttgtgctgtgatatatgcacttgaattcgtttccggta |
393 |
Q |
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| T |
6338273 |
atatggtaatttattgttgatttttcatatcttcttgtttttctatgcttgtgctgtgatatatgcacttgaactcgttttcggta |
6338188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 68 - 331
Target Start/End: Complemental strand, 14193147 - 14192878
Alignment:
| Q |
68 |
tctgtaaaactggcatgtagg-ttatctgagtgacttgg----actacaagtt-tttgatatgataattgtgtagagaaacttcagcattcaaatgtggc |
161 |
Q |
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| T |
14193147 |
tctgtaataatggcatgtagggttatctgagtggcttagttccactacaagttctttgatatgataaatgtgtactcagacttcattattcaaatgcggc |
14193048 |
T |
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| Q |
162 |
tttgaaacatgtcttaatatagttttatacttttaaatcttcttttttccttactttggggggatttattctgctcatttttgttcataggaccctcaca |
261 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||| |||||||| | || ||||| | ||||| |||||||||||||| |||||||||||| |
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| T |
14193047 |
tttgaaatatgtcttaatatagttttatacttttaaaccttattttttccattctctggggagccttattttgctcatttttgttaataggaccctcaag |
14192948 |
T |
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| Q |
262 |
ttgtcaccagttctcatgattctacaattaagatgtgggaccttagatatggtaatttattgttgatttt |
331 |
Q |
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| T |
14192947 |
ttgtcactggttctcacgattctacaatcaagatgtgggaccttagatatggtaatttattgttgttttt |
14192878 |
T |
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