View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7795_low_5 (Length: 343)
Name: NF7795_low_5
Description: NF7795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7795_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 9213611 - 9213300
Alignment:
| Q |
16 |
attggaacctagtacaccaagctaaatctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaacccacttgacaaatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9213611 |
attggaacctagtacaccaagctaaatctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaatccacttgacaaatc |
9213512 |
T |
|
| Q |
116 |
tatgttccaaacattcgccgacatcggtatcgtctccggttccggagaagacaccgatgagacacaaaaaacaatgaaccaaaaattgcaacaaatgaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9213511 |
tatgttccaaacattcgccgacatcggtatcgtctccggttccggagaagacaccgatgagacacaaaaaacaatgaaccaaaaattgcaacaaatgaat |
9213412 |
T |
|
| Q |
216 |
aacattgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccaccattagcaacaccaacaaaaacaagaactgaaaaagattctt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9213411 |
aacattgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccaccattagcaacaccaacaaaaacaagaactgaaaaagattctt |
9213312 |
T |
|
| Q |
316 |
ttgagaaaagag |
327 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9213311 |
ttgagaaaagag |
9213300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 9194416 - 9194514
Alignment:
| Q |
16 |
attggaacctagtacaccaagctaaatctatgttccaaacatcctcgtcagaatctaactcagaaatagatcttatctccacaaacccacttgacaaat |
114 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||||| | |||| ||||||||| |
|
|
| T |
9194416 |
attggaacctcgtgcaccaagctaaatctatgttccaaacatcctcgtcagaatcaaactcaaatttagatcttacctccaccaccccatttgacaaat |
9194514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 327
Target Start/End: Original strand, 9194627 - 9194730
Alignment:
| Q |
221 |
tgtttcatcatgttctattgattctgaaaattctgattcagaatattgtccaccattagcaacaccaacaaaaacaagaactgaaaaagattcttttgag |
320 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||| || | || |||||||||||| |
|
|
| T |
9194627 |
tgtttcatcatgttctttagattctgaagattctgattcagaatattgtccactgttagcaacaaaaacaacaacagcaa---agaacgattcttttgag |
9194723 |
T |
|
| Q |
321 |
aaaagag |
327 |
Q |
| |
|
||||||| |
|
|
| T |
9194724 |
aaaagag |
9194730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University